Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,489,689 – 10,489,809 |
Length | 120 |
Max. P | 0.720426 |
Location | 10,489,689 – 10,489,809 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.17 |
Mean single sequence MFE | -37.62 |
Consensus MFE | -29.14 |
Energy contribution | -29.94 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.22 |
Mean z-score | -1.70 |
Structure conservation index | 0.77 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10489689 120 - 27905053 UUAAAGGAUCGCUUAACCAUCACCACUUCGCCGUUGGCUUCGGCCAAUUUUAAAGCUCGAUGGAGGAGGCGGGCGGUUUUCUUCGGAUCCUUCCACUCCUGACCAUUGUCCUUUAGGUAU (((((((((.......(((((....(((....((((((....))))))....)))...)))))(((((..(((.((...((....)).)).))).))))).......))))))))).... ( -42.30) >DroSec_CAF1 35766 120 - 1 UUAAAGGAUCGCUUGACCAUCACCACUUCGCCGUUGGCUUCGGCCAAUUUUAGAGCUCGAUGGAUGAGGCGGGCGGUGUUCUUCGGAUCCUUCCACUCCUGACCAUUGUCCUUUAGGUAU (((((((((.((((.((((((....(((....((((((....))))))....)))...))))).).))))(((.((...((....)).)).))).............))))))))).... ( -40.10) >DroSim_CAF1 36494 120 - 1 UUAAAGGACCUUUUAACCAUCACUACUUCGCCGUUGGCUUCGGCCAAUUUUAGAGCUCGAUGGAUGAGGCGGGCGGUUUUCUUCGGAUCCUUCCACUCCUGACCAUUGUCCUUUAGGUAU (((((((((.......(((((....(((....((((((....))))))....)))...)))))..(((..(((.((...((....)).)).))).))).........))))))))).... ( -39.30) >DroEre_CAF1 36518 120 - 1 UUGAAGGAGCGCUUAACCAUCACCACUUCACCGUUGGAUUCGGCCAAUUUUAGAGCUCGAUGGAUGAGACGUGCGGUUUUCUUCGGAUCUUUCCAUUCUUGACCGUUGUCCUUAAGGUAU ...((((((((((((.(((((....(((....(((((......)))))....)))...))))).)))).)))((((((......(((....)))......))))))..)))))....... ( -33.00) >DroYak_CAF1 36111 120 - 1 UUAAAGGAGCGCUUGACCAUCACCACUUCGCCGUUGGAUUCGGCCAGUUUCAGAGCUCGAUGCAUGAAACGGGCGGUUUUCUUGGGAUCCUUCCAUUCCUGACCAUUGUCCUUAAGGUAU .....((((.(..((.....)).).))))(((...((((...(((.((((((..((.....)).)))))).)))((((......(((....)))......))))...))))....))).. ( -33.40) >consensus UUAAAGGAGCGCUUAACCAUCACCACUUCGCCGUUGGCUUCGGCCAAUUUUAGAGCUCGAUGGAUGAGGCGGGCGGUUUUCUUCGGAUCCUUCCACUCCUGACCAUUGUCCUUUAGGUAU ((((((((((((((..(((((....(((.(..((((((....))))))..).)))...)))))...))))))..((((......(((....)))......))))....)))))))).... (-29.14 = -29.94 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:31 2006