Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,486,132 – 10,486,246 |
Length | 114 |
Max. P | 0.827766 |
Location | 10,486,132 – 10,486,246 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 76.93 |
Mean single sequence MFE | -45.96 |
Consensus MFE | -29.61 |
Energy contribution | -30.58 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.30 |
Mean z-score | -1.57 |
Structure conservation index | 0.64 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10486132 114 + 27905053 CAGCUGGACCAGCGGCAGCAGCAGCGGCCGCAGCUUCCCCGCCCUCAGCGGUGGCGCCCACUCCCAGUUCAGCUUGCGAGCUGCAGGCUAGACAACAGCCUCCCCAGCAGCCAC .((((((((..(((((.((....)).))))).((..((((((.....)))).)).)).........))))))))...(.((((((((((.......))))).....)))))).. ( -47.10) >DroVir_CAF1 28110 102 + 1 C---CAUAAC---CGCAGCAGCCGCCGCGGCGGCAUCACCCCCCUCAGCUGCCGCACCCACAGCCAGUGCAGUUUGCGAGUUGCAGGCUCGUCAACACCCC---CUACAAC--- .---......---.(((((.(((((....))))).............))))).((((.........)))).(((.((((((.....)))))).))).....---.......--- ( -30.54) >DroGri_CAF1 36024 103 + 1 C---CACAAC---UGCAGCAGCAGCGGCUGCAGCUUCGCCUCCAUCGGCUGCUGCGCCAACGGCAAGCGCUGUUUGUGAGCUGCAGGCACGUCAGCAGCCA---CAACAGCC-- .---......---.((.((((((((.(.((.((......)).)).).))))))))(((...)))..))((((((.(((.(((((.((....)).)))))))---))))))).-- ( -45.80) >DroSec_CAF1 32277 114 + 1 CAGCUGGACCAGCGGCGGCAGCAGCGGCCGCAGCUUCCCCGCCCUCAGCGGUGGCGCCCACACCCAGCUCAGCUUGCGAGCUGCAGGCUAGGCAACAGCCGCCCCAGCAGCCAC ..(((((....(((((((((((.((....)).))).((((((.....)))).)).)))........((..(((((((.....)))))))..))....))))).)))))...... ( -51.60) >DroSim_CAF1 32989 114 + 1 CAGCUGGACCCGCGGCGGCAGCAGCGGCCGCAGCUUCCCCACCCUCAGCGGUGGCGCCCACGCCCAGCUCAGCUUGCGAGCUGCAGGCUAGGCAACAGCCGCCCCAGCAGCCAC ..(((((....(((((.((....)).)))))................(((((((((....))))..((..(((((((.....)))))))..))....))))).)))))...... ( -53.90) >DroYak_CAF1 32602 114 + 1 CAGCUGGACCAGCAGCAGCUGCAGCGGCCGCAGCUUCCCCACCCUCGGCGGUGGCGCCAACGCCCAGCUCCGCUUGCGAGCUGCAGGCCAGACAACAGCCGCCCCAGCAGCCAC ..(((((....((.(((((((((((((....((((.((((......)).)).((((....)))).)))))))).))).)))))).(((.........))))).)))))...... ( -46.80) >consensus CAGCUGGACCAGCGGCAGCAGCAGCGGCCGCAGCUUCCCCACCCUCAGCGGUGGCGCCCACGCCCAGCUCAGCUUGCGAGCUGCAGGCUAGACAACAGCCGCCCCAGCAGCCAC ..(((((.......(((((.(((((.(((((.(((...........))).)))))((.........))...)).)))..))))).((((.(....)))))...)))))...... (-29.61 = -30.58 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:30 2006