| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,484,083 – 10,484,173 |
| Length | 90 |
| Max. P | 0.806489 |
| Location | 10,484,083 – 10,484,173 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 78.28 |
| Mean single sequence MFE | -26.79 |
| Consensus MFE | -21.92 |
| Energy contribution | -22.48 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806489 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10484083 90 + 27905053 CGAAUCCGGGAGUUUCCCUGGCUGGCCCUCAUUGAGUAUACGCGCGGUGAGU-UGCCGGUUUUGGUAAUAUAUG----UAUAUGUAGGUCACAGU .....(((((......))))).((((((((((((.((....)).)))))))(-(((((....))))))......----........))))).... ( -24.50) >DroPse_CAF1 27163 87 + 1 CGGAUCAAGGAGUUCCCCUGGCUGGCCCUUAUCGAAUAUACAAAGGGUGAGUGUACCC--CCAGAUAGCAAUUA----CCUCUCAUGGUCACA-- ..(((((((((((((..((((((.((((((............)))))).)).......--))))...).)))).----)))....)))))...-- ( -19.01) >DroSec_CAF1 30283 94 + 1 CGAAUCAGGGAGUUUCCCUGGCUGGCCCUUAUUGAGUAUACGCGCGGUGAGU-UGCCGUUUUUGGUAAUAUAUACAUACAUAUGUAGGUCAGAGU ....((((((.....))))))(((((((((((((.((....)).)))))))(-(((((....))))))....(((((....)))))))))))... ( -30.90) >DroSim_CAF1 30981 86 + 1 CGAAUCAGGGAGUUUCCCUGGCUGGCCCUCAUUGAGUAUACGCGCGGUGAGU-UGCCGUUUUUGGUAAUAUA--------UAUGUAGGUCAGAGU ....((((((.....))))))(((((((((((((.((....)).)))))))(-(((((....))))))....--------......))))))... ( -31.30) >DroEre_CAF1 30941 82 + 1 CGAAUCAGGGAGUUUCCCUGGCUGGCCCUCAUUGAGUAUACGCGCGGUGAGU-UGCCGUUUUGGGUGAU------------AUGUAGGUCAGAAU ....((((((.....))))))(((((((((((((.((....)).)))))))(-..((......))..).------------.....))))))... ( -30.10) >DroYak_CAF1 30591 83 + 1 CGAAUCAGGGAGUUUCCCUGGCUGGCCCUCAUUGAGUAUACGCGCGGUAAGUGCGCCGUUUUAGGUGAC------------AUGUAAGUCAGAAU ....((((((.....))))))(((((...(((((((....(((((.....)))))....))))(....)------------)))...)))))... ( -24.90) >consensus CGAAUCAGGGAGUUUCCCUGGCUGGCCCUCAUUGAGUAUACGCGCGGUGAGU_UGCCGUUUUUGGUAAUAUA________UAUGUAGGUCAGAGU ....((((((.....))))))(((((((((((((.((....)).)))))))..((((......))))...................))))))... (-21.92 = -22.48 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:29 2006