Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,482,780 – 10,482,913 |
Length | 133 |
Max. P | 0.999998 |
Location | 10,482,780 – 10,482,882 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 79.76 |
Mean single sequence MFE | -27.59 |
Consensus MFE | -23.42 |
Energy contribution | -23.10 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.21 |
Mean z-score | -2.57 |
Structure conservation index | 0.85 |
SVM decision value | 2.61 |
SVM RNA-class probability | 0.995701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10482780 102 + 27905053 UUCAACCCGGUCAUGGUUAAUUCACACCA-----------CAACUAAACGCCGAGAUGCCGAACAUAUGAGAGGCUCGACUUAAGAUGUUCGGCAUUCGAAUUUCUAACGUCU ........(((..((((........))))-----------..)))......((((.((((((((((....(((......)))...)))))))))))))).............. ( -26.50) >DroSec_CAF1 29009 102 + 1 UUCAAACCAGUCUUGGUUCAUAGAUACCAUAU-----------AUAAACGCUGAGAUGCUGAAUAUCUAAGAGGCUCGACUUUAGAUGUUCGGCAUUCGAAUUCCUAAUGUCU (((....((((..((((........))))...-----------......)))).(((((((((((((((.(((......)))))))))))))))))).)))............ ( -26.50) >DroSim_CAF1 29683 113 + 1 UUCAAACCUGUCUUUGUUCAUAGAUACCAUAUUCAUACCACAAAUAAACGCUGAGAUGCCGAACAUCUAACAGGCUCGACUUUAGAUGUUCGGCAUUCGAAUUCCUAAUGUGU ........(((((........)))))............((((.........((((.((((((((((((((.((......)))))))))))))))))))).........)))). ( -29.77) >consensus UUCAAACCAGUCUUGGUUCAUAGAUACCAUAU________CAAAUAAACGCUGAGAUGCCGAACAUCUAAGAGGCUCGACUUUAGAUGUUCGGCAUUCGAAUUCCUAAUGUCU .........((((........))))..........................((((.((((((((((((((.((......)))))))))))))))))))).............. (-23.42 = -23.10 + -0.32)
Location | 10,482,809 – 10,482,913 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 72.44 |
Mean single sequence MFE | -28.66 |
Consensus MFE | -22.26 |
Energy contribution | -22.27 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.15 |
Mean z-score | -3.46 |
Structure conservation index | 0.78 |
SVM decision value | 6.42 |
SVM RNA-class probability | 0.999998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10482809 104 + 27905053 ------CAACUAAACGCCGAGAUGCCGAACAUAUGAGAGGCUCGACUUAAGAUGUUCGGCAUUCGAAUUUCUAACGUCUCCAAAUGGGAGACUUUUAAAAUCACGAUCAG ------........((.((((.((((((((((....(((......)))...))))))))))))))..........((((((.....))))))...........))..... ( -31.70) >DroSec_CAF1 29041 85 + 1 ---------AUAAACGCUGAGAUGCUGAAUAUCUAAGAGGCUCGACUUUAGAUGUUCGGCAUUCGAAUUCCUAAUGUCU---AAU----A----UCAGAAUUAGC----- ---------......((((((((((((((((((((.(((......)))))))))))))))))).............(((---...----.----..))).)))))----- ( -25.10) >DroSim_CAF1 29717 98 + 1 AUACCACAAAUAAACGCUGAGAUGCCGAACAUCUAACAGGCUCGACUUUAGAUGUUCGGCAUUCGAAUUCCUAAUGUGU---AAU----GACUUUUAAAGUUACG----- ....((((.........((((.((((((((((((((.((......)))))))))))))))))))).........)))).---..(----((((.....)))))..----- ( -29.17) >consensus ______CAAAUAAACGCUGAGAUGCCGAACAUCUAAGAGGCUCGACUUUAGAUGUUCGGCAUUCGAAUUCCUAAUGUCU___AAU____GACUUUUAAAAUUACG_____ .................((((.((((((((((((((.((......))))))))))))))))))))............................................. (-22.26 = -22.27 + 0.01)
Location | 10,482,809 – 10,482,913 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 72.44 |
Mean single sequence MFE | -27.13 |
Consensus MFE | -17.10 |
Energy contribution | -18.43 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.59 |
Structure conservation index | 0.63 |
SVM decision value | 4.19 |
SVM RNA-class probability | 0.999832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10482809 104 - 27905053 CUGAUCGUGAUUUUAAAAGUCUCCCAUUUGGAGACGUUAGAAAUUCGAAUGCCGAACAUCUUAAGUCGAGCCUCUCAUAUGUUCGGCAUCUCGGCGUUUAGUUG------ ((((.(((((((((.((.((((((.....)))))).)).))))))((((((((((((((....((........))...))))))))))).)))))).))))...------ ( -34.10) >DroSec_CAF1 29041 85 - 1 -----GCUAAUUCUGA----U----AUU---AGACAUUAGGAAUUCGAAUGCCGAACAUCUAAAGUCGAGCCUCUUAGAUAUUCAGCAUCUCAGCGUUUAU--------- -----(((..((((((----(----...---....)))))))....((((((.(((.((((((((......)).)))))).))).)))).)))))......--------- ( -18.30) >DroSim_CAF1 29717 98 - 1 -----CGUAACUUUAAAAGUC----AUU---ACACAUUAGGAAUUCGAAUGCCGAACAUCUAAAGUCGAGCCUGUUAGAUGUUCGGCAUCUCAGCGUUUAUUUGUGGUAU -----................----...---.((((....((((.((((((((((((((((((((......)).))))))))))))))).)).).))))...)))).... ( -29.00) >consensus _____CGUAAUUUUAAAAGUC____AUU___AGACAUUAGGAAUUCGAAUGCCGAACAUCUAAAGUCGAGCCUCUUAGAUGUUCGGCAUCUCAGCGUUUAUUUG______ ..............................................(((((((((((((((((((......)).))))))))))))))).)).................. (-17.10 = -18.43 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:28 2006