| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,482,056 – 10,482,161 |
| Length | 105 |
| Max. P | 0.978960 |
| Location | 10,482,056 – 10,482,161 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.18 |
| Mean single sequence MFE | -41.66 |
| Consensus MFE | -13.58 |
| Energy contribution | -14.38 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.33 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.978960 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10482056 105 + 27905053 GAUUGGUACGUGCGCGUUGCCAUCUUGAAACUGGUUACCUUAGCCAUAACGCGCAGUCUCCAAUGGGCGG------------CCAAUCAGAGCACCGGCGGUCUGAUUGGUCGGCUC--- .(((((.((.(((((((((............((((((...)))))))))))))))))..)))))((.(((------------(((((((((.(......).)))))))))))).)).--- ( -45.60) >DroSec_CAF1 28169 105 + 1 GAUUGGCACAUGCGCGUUGCCAUUUUGAAACUGGUUACCAUAGCCAUAAGGCGCCGUAUCCAAUGGGUGG------------CCAAUCAGAGCACCGGCGCUCUGAUUGGUCGGCUC--- .(((((...((((((((.((((.........)))).))....(((....)))).))))))))))((.(((------------(((((((((((......)))))))))))))).)).--- ( -42.50) >DroSim_CAF1 28857 95 + 1 GAUUGGCACAUGCGCGUUGCCAUCUUGAAACUGGUUACCAUAGCCAUA----------GCCAAUGGGUGG------------CCAAUCAGAGCACCGGCGCUCUGAUUGGUCGGCUU--- .((((((..(((.((((.((((.........)))).))....))))).----------))))))((.(((------------(((((((((((......)))))))))))))).)).--- ( -39.50) >DroEre_CAF1 28430 109 + 1 CAUGGGUUCAUGCGCGGUGCCAUCUACAAAAUGGUCUCCACAGCCAUUACGCGCAGUGCCCAAGAGGCGGAGUUCACAUC--------UUCUCACGGGCGCUGUGAUUGGCUGGCUC--- ((((....)))).((((.(((((.......)))))..)).((((((.....((((((((((..((((.(((.......))--------)))))..))))))))))..))))))))..--- ( -44.80) >DroYak_CAF1 28401 120 + 1 GAACAACACAUGCGCGGUGCCAUCUUCAAAAUGGGUACCACAGCCAUCACAUGCAGUGCCCAAGGGGCGGAGUUCACGUCUUCAAGUCUUCUCACGGGCACUCUGAUUGGCCGGCUCCCA .............((((((((............)))))).(.(((((((...(.(((((((..((((((.......))))))...((......))))))))))))).)))).)))..... ( -35.90) >consensus GAUUGGCACAUGCGCGUUGCCAUCUUGAAACUGGUUACCAUAGCCAUAACGCGCAGUGCCCAAUGGGCGG____________CCAAUCAGAGCACCGGCGCUCUGAUUGGUCGGCUC___ ...((((.((..((.((((((..........(((((.....)))))..........((((.....))))...........................)))))).))..))))))....... (-13.58 = -14.38 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:25 2006