Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,480,397 – 10,480,507 |
Length | 110 |
Max. P | 0.934346 |
Location | 10,480,397 – 10,480,490 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 94.62 |
Mean single sequence MFE | -21.23 |
Consensus MFE | -18.25 |
Energy contribution | -18.38 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -2.04 |
Structure conservation index | 0.86 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10480397 93 - 27905053 AACGCCGGCAACAGCGAUUCUCGAGUGCCCUUCCCGCCACUCCCCAACAGUUGCCAUCCCACCCCUCGCAGCGGCGGCACACCCACAAACCAC ...(((((((((...(.....)(((((.(......).))))).......))))))............((....)))))............... ( -22.00) >DroSec_CAF1 26550 93 - 1 AACGCCGGCAACAGCGAUUCUCGAGUGCCCUUCCCGCCACUCCCCAACAGUUGCCACCCCACCCCUCGCAGCGGCGGCACACCCACAAACCAC ...(((((((((...(.....)(((((.(......).))))).......))))))............((....)))))............... ( -22.00) >DroSim_CAF1 27224 93 - 1 AACGCCGGCAACAGCGAUUCUCGAGUGCCCUUCCCGCCACUCCCCAACAGUUGCCACCCCACCCCUCGCAGCGGCGGCACACCCACAAACCAC ...(((((((((...(.....)(((((.(......).))))).......))))))............((....)))))............... ( -22.00) >DroEre_CAF1 26695 90 - 1 AACGCCGGCAACAGCGAUUCUCGAGUGCUCUUCCCGCCACUCCCCAACAGUUUCUGCUCCACCCCUCGCA---CCGGCACACCCACAAACCAC ...(((((.....((((.....((((((.......).)))))......(((....))).......)))).---)))))............... ( -18.90) >consensus AACGCCGGCAACAGCGAUUCUCGAGUGCCCUUCCCGCCACUCCCCAACAGUUGCCACCCCACCCCUCGCAGCGGCGGCACACCCACAAACCAC ...(((((((((...(.....)(((((.(......).))))).......))))))............((....)))))............... (-18.25 = -18.38 + 0.12)
Location | 10,480,410 – 10,480,507 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 93.38 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -18.98 |
Energy contribution | -19.46 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.10 |
Mean z-score | -2.06 |
Structure conservation index | 0.80 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10480410 97 - 27905053 AACAGAGAAAUCAUAAAAACGCCGGCAACAGCGAUUCUCGAGUGCCCUUCCCGCCACUCCCCAACAGUUGCCAUCCCACCCCUCGCAGCGGCGGCAC ....((....))........(((((((((...(.....)(((((.(......).))))).......))))))............((....))))).. ( -23.80) >DroSec_CAF1 26563 97 - 1 AACAGAGAAAUCAUAAAAACGCCGGCAACAGCGAUUCUCGAGUGCCCUUCCCGCCACUCCCCAACAGUUGCCACCCCACCCCUCGCAGCGGCGGCAC ....((....))........(((((((((...(.....)(((((.(......).))))).......))))))............((....))))).. ( -23.80) >DroSim_CAF1 27237 97 - 1 AACAGAGAAAUCAUAAAAACGCCGGCAACAGCGAUUCUCGAGUGCCCUUCCCGCCACUCCCCAACAGUUGCCACCCCACCCCUCGCAGCGGCGGCAC ....((....))........(((((((((...(.....)(((((.(......).))))).......))))))............((....))))).. ( -23.80) >DroEre_CAF1 26708 94 - 1 AACAGAGAAAUCAUAAAAACGCCGGCAACAGCGAUUCUCGAGUGCUCUUCCCGCCACUCCCCAACAGUUUCUGCUCCACCCCUCGCA---CCGGCAC ....((....))........(((((.....((((.....((((((.......).)))))......(((....))).......)))).---))))).. ( -20.70) >DroYak_CAF1 26849 94 - 1 AACAGAGAAAUCAUAAAAACGCCGGCAACAGCGAUUCUCGAGUGCCCUUCCCGCCACUCCCCAAUCGUUGCCACCCCACCCCUCACG---CCGGCAC ....((....))........((((((..((((((((...(((((.(......).)))))...))))))))................)---))))).. ( -26.67) >consensus AACAGAGAAAUCAUAAAAACGCCGGCAACAGCGAUUCUCGAGUGCCCUUCCCGCCACUCCCCAACAGUUGCCACCCCACCCCUCGCAGCGGCGGCAC ....((....))........(((((((((...(.....)(((((.(......).))))).......))))))............((....))))).. (-18.98 = -19.46 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:24 2006