Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,476,489 – 10,476,585 |
Length | 96 |
Max. P | 0.612758 |
Location | 10,476,489 – 10,476,585 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 80.67 |
Mean single sequence MFE | -21.88 |
Consensus MFE | -14.65 |
Energy contribution | -16.10 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.09 |
Mean z-score | -1.45 |
Structure conservation index | 0.67 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10476489 96 - 27905053 UAAGAAG-----CAUAAACAAAGGUGUCACGUACACUUUUGCACUCACACGUACUG----CAAAGGAGUCGGAUAGAAUGAGAUAGUGGGUGCGGAAAAGGGGGA .......-----.......((((((((.....))))))))((((((((.((.(((.----(...).)))))..((........))))))))))............ ( -20.30) >DroVir_CAF1 20848 90 - 1 -A--AUUCACAGUAUAAACAAAACUAUCACGUACACACACACACACACUCAUACUCUCCUCAUAUGAG--GUCUUGCAUACGCAAGUGUGAGUAG---------- -.--.......((((...............))))............((((((((...((((....)))--)..((((....))))))))))))..---------- ( -18.26) >DroSec_CAF1 22549 96 - 1 UAAGAAA-----CAUAAACAAAGGUGUCACGUACACUUUUGCACUCACACGUACUG----CAAAGGAGUCGGAUAGAAUGCGAUAGUGGGUGCGGAAAAGGGGGA .......-----.......((((((((.....))))))))((((((((.....((.----...))..((((.((...)).)))).))))))))............ ( -22.80) >DroSim_CAF1 23241 96 - 1 UAAGAAA-----CAUAAACAAAGGUGUCACGUACACUUUUGCACUCACACGUACUG----CAAAGGAGUCGGAUAGAAUGCGAUAGUGGGUGCGGAAAAGGGGGA .......-----.......((((((((.....))))))))((((((((.....((.----...))..((((.((...)).)))).))))))))............ ( -22.80) >DroEre_CAF1 22695 96 - 1 CAAGAAA-----CAUAAACAAAGGUGUCACGUACACUUUUGCACUCACACGUACUG----CAAAGGAGUCGGAUUGAAUGCGAUAGUGGGUGCGGAAAAGGGGAA .......-----.......((((((((.....))))))))((((((((.((.(((.----(...).))))).((((....)))).))))))))............ ( -23.00) >DroYak_CAF1 22855 96 - 1 UAAGAAA-----CAUAAACAAAGGUGUCACGUACACUUUUGCACUCACACGUACUG----CAAAGGAGUCGGAUUGAAUGCGAUAGUGGGUGCGGAAGAGGGGAA ...(..(-----(((........))))..).....(((((((((((((.((.(((.----(...).))))).((((....)))).)))))))))))))....... ( -24.10) >consensus UAAGAAA_____CAUAAACAAAGGUGUCACGUACACUUUUGCACUCACACGUACUG____CAAAGGAGUCGGAUAGAAUGCGAUAGUGGGUGCGGAAAAGGGGGA ...................((((((((.....))))))))((((((((.....((........))..((((.........)))).))))))))............ (-14.65 = -16.10 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:23 2006