Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,472,896 – 10,472,986 |
Length | 90 |
Max. P | 0.974507 |
Location | 10,472,896 – 10,472,986 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 68.56 |
Mean single sequence MFE | -27.85 |
Consensus MFE | -6.07 |
Energy contribution | -6.46 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.20 |
Mean z-score | -3.02 |
Structure conservation index | 0.22 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974507 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10472896 90 - 27905053 AAAUGUCUUCCAAAGUGGCCAAUU------------------UAAACGCCU---UCAACCGUCAAGCACCCAUAGCUUCAAAGGGCGUUAGAAAUGGCAUCACUAACAACA .............((((((((.((------------------(.(((((((---(........((((.......))))...)))))))).))).))))..))))....... ( -22.10) >DroVir_CAF1 16713 102 - 1 AAAUGUCUUCCAAAGUUGCCAAUUCUGUUGUU---AGUAAUGCUGGCGCCU---UAAAACGUAAAGCGCCGGUGGCUAGCACAGGUUGCAGAAAGGGCAAUAAAACAA--- ..............((((((..((((((((((---(((...((((((((.(---((.....))).)))))))).)))))))......))))))..)))))).......--- ( -37.60) >DroPse_CAF1 18575 111 - 1 AAAUGUCUUCCAAAGUUGCCAAUGCUAAUGCUGCCGUCAAUGCAAACGCCGCGCCAAAACGUCAAACGCCAGGAGCUGCUGCUGGCGGCAGAAGAGGCAACAACAACAAAA ..............((((((....((....(((((((((..(((...((.((.((....((.....))...)).)).)))))))))))))).)).)))))).......... ( -34.50) >DroSec_CAF1 18851 90 - 1 AAAUGUCUUCCAAAGUGGCCAAUU------------------UAAACGCCU---CCAACCGUCAAGCACCCAUAGCUUCAAAGGGCGUUAGAAAUGGCAACACUAACAACA .............((((((((.((------------------(.(((((((---.........((((.......))))....))))))).))).))))..))))....... ( -21.32) >DroEre_CAF1 19088 90 - 1 AAAUGUCUUCCAAAGUGGCCAAUU------------------UAAACGCCU---CCAAUCGUCAAGCACCCAUAGCUUCAAAGGACGUUAGAAAUGGCAUCACUAACAACA .............((((((((.((------------------(.(((((((---.........((((.......))))...))).)))).))).))))..))))....... ( -17.10) >DroPer_CAF1 18569 111 - 1 AAAUGUCUUCCAAAGUUGCCAAUGCUAAUGCUGCCGUCAAUGCAAACGCCGCGCCAAAACGUCAAACGCCAGGAGCUGCUGCUGGCGGCAGAAGAGGCAACAACAACAAAA ..............((((((....((....(((((((((..(((...((.((.((....((.....))...)).)).)))))))))))))).)).)))))).......... ( -34.50) >consensus AAAUGUCUUCCAAAGUGGCCAAUU__________________CAAACGCCU___CAAAACGUCAAGCACCCAUAGCUUCAAAGGGCGGCAGAAAUGGCAACAAUAACAACA ...............................................(((.........((((.(((.......)))......))))........)))............. ( -6.07 = -6.46 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:22 2006