Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,456,666 – 1,456,786 |
Length | 120 |
Max. P | 0.510997 |
Location | 1,456,666 – 1,456,786 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.41 |
Mean single sequence MFE | -46.52 |
Consensus MFE | -29.06 |
Energy contribution | -30.82 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.23 |
Mean z-score | -1.68 |
Structure conservation index | 0.62 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.510997 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1456666 120 + 27905053 GGGAGUGACGAGGAAUCCGGAAUGGAGGAUCCUCAAAAUCGGGGUCGCAACAGCGCCAUCCUCUCUAGCAGCGAAAGCGACCCGGUUCCGGAACCCCGUUACACCCUUGAAGGCAAGUAC (((.((((((.((..((((((((.(((....))).......(((((((....((((...........)).))....))))))).))))))))..)))))))).))).............. ( -50.40) >DroSec_CAF1 29073 118 + 1 --GAGUGACGAGGAACCCGGAGCAGAGGAUCCUGCCACUCAGGGUCGCAACGGCGCCAUCCUCUCUAGCAGCGAAAGCGACACGGUUCCGGAACCCCGUUACUCCCUCGAGGGCAAGUAC --((((((((.((...((((((((((((((.(((.....)))((.(((....))))))))))))...(..((....))..)...)))))))...))))))))))((....))........ ( -48.60) >DroSim_CAF1 27347 118 + 1 --GAGUGACGAGGAACCCGGAGCAGAGGAUCCUGCCACUCAGGGCCGCAACGGCGCCAUCCUCUCUAGCAGCGAAAGCGACACGGUUCCGGAACCCCGUUACUCCCUCGAGGGCAAGUAC --((((((((.((...((((((((((((((((((.....))))((((...))))...)))))))...(..((....))..)...)))))))...))))))))))((....))........ ( -50.60) >DroEre_CAF1 30753 120 + 1 GAAAGUGAAGAGGAAUCCGCAGCGGAGGAUCUUCCCGGUCAGGGUCGAAACUGCGUCGUCCUCUCUAGCAGCGGAAGCGAUACGCUUCCGGAUCCCUGUUACUCCCUCGUCGGCAGGUAC ....((..((((((...((((((((..((((.....))))....)))...)))))...))))))...))..((((((((...))))))))....((((((((......)).))))))... ( -42.30) >DroYak_CAF1 29182 113 + 1 -------AAGAGGAGUCCGGAGCAGAGCAUUUUCCCAGUCAGGGUCGGAAUGGCGUCAUCCGCUCUAGCAGCGAUAGCGAUGCGAUUCCGGAACCCUGUUUCACCCUCGUGGGCACGUAC -------..((((.((..(((((((........(((.....)))(((((((.(((((....((....)).((....))))))).)))))))....)))))))))))))............ ( -40.70) >consensus __GAGUGACGAGGAAUCCGGAGCAGAGGAUCCUCCCACUCAGGGUCGCAACGGCGCCAUCCUCUCUAGCAGCGAAAGCGACACGGUUCCGGAACCCCGUUACUCCCUCGAGGGCAAGUAC ....((((((.((..((((((((((((((((((.......)))(.(((....))).))))))))......((....))......))))))))..)))))))).(((....)))....... (-29.06 = -30.82 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:57 2006