Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,472,657 – 10,472,756 |
Length | 99 |
Max. P | 0.535879 |
Location | 10,472,657 – 10,472,756 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 82.71 |
Mean single sequence MFE | -34.40 |
Consensus MFE | -23.79 |
Energy contribution | -25.23 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.13 |
Mean z-score | -1.56 |
Structure conservation index | 0.69 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535879 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10472657 99 + 27905053 AUUA------AAGCCGGAGUGCAGCCAAUGCUGUUGUAGGCAGUAGGGCGAAUCCACUGAAAAGGACUCGUUCUCACUCAGAGUGUCCAAGCUGCGUCUGCAGGC ....------..((((.((((((((...((((((.....))))))((((((.(((........))).))...(((.....))).))))..)))))).)).).))) ( -33.60) >DroSec_CAF1 18612 99 + 1 AUUA------AAGCCGGAGUGCAGCCAAUGCUGUUGUAGGCAGUAGGGCGAAUCCACCGAAAAGGACUCGUUCUCACUCAGAGUGUCCAGGCUGCGUUUGCAGGC ....------..(((.((((((((((..((((((.....))))))((((((.(((........))).))...(((.....))).)))).))))))))))...))) ( -35.70) >DroSim_CAF1 19350 99 + 1 AUUA------AAGCCGGAGUGCAGCCAAUGCUGUUGUAGGCAGUAGGGCGAAUCCACUGAAAAGGACUCGUUCUCACUCAGAGUGUCCAGGCUGCGUUUGCAGGC ....------..(((.((((((((((..((((((.....))))))((((((.(((........))).))...(((.....))).)))).))))))))))...))) ( -35.70) >DroEre_CAF1 18852 99 + 1 CUUC------CAGCCAGAGUGCAGCCAAUGCUGUUGUAGGCAGUAGGGCGAGUCCACUGAAAAGGAUUCGUUCUCACUCAGGGUGUCCAAGCUGCGUUUGCAGGC ....------((.((.(((((.......((((((.....))))))((((((((((........)))))))))).))))).)).))......((((....)))).. ( -35.60) >DroWil_CAF1 19741 97 + 1 CUUGCCCGAGGAGGCGGAGUGUAGCCAAUGCUGUUGCAGACAAUAGGGCACAUCCGACAAAAUGGUUUCAUUCUCGCUGCUUGU---UAGACAGCGUUUA----- ...(((......)))((((((.(((((...((((((....))))))((.....)).......))))).))))))(((((((...---.)).)))))....----- ( -27.90) >DroYak_CAF1 19051 99 + 1 CUUA------AAGCCGGAAUGCAGCCAAUGCUGUUGUAGGCAGUAGGGCGAAUCCACUAAAAAGGAUUCGUUCUCACUCAGGGUGUCCAAGCUGCGUUUGCAGGC ....------..(((.(((((((((...((((((.....))))))((((((((((........)))))))))).(((.....))).....)))))))))...))) ( -37.90) >consensus AUUA______AAGCCGGAGUGCAGCCAAUGCUGUUGUAGGCAGUAGGGCGAAUCCACUGAAAAGGACUCGUUCUCACUCAGAGUGUCCAAGCUGCGUUUGCAGGC ............(((.(((((((((...((((((.....))))))((((((.(((........))).)))))).(((.....))).....)))))))))...))) (-23.79 = -25.23 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:21 2006