Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,442,998 – 10,443,093 |
Length | 95 |
Max. P | 0.577074 |
Location | 10,442,998 – 10,443,093 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 79.20 |
Mean single sequence MFE | -29.12 |
Consensus MFE | -18.60 |
Energy contribution | -18.67 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.36 |
Mean z-score | -1.38 |
Structure conservation index | 0.64 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10442998 95 - 27905053 CAGAUCCAGAGCCAAGUCGGGCGAUGAAGAUUUAUUGUAGUUCUCAUCGCUGUCGCUGGAUGUGGCCACUGGGGCAACGAGAUAAG-UAUUAAUUG ((.((((((..((.....))(((((((..(((......)))..))))))).....)))))).))(((.....)))...........-......... ( -29.00) >DroVir_CAF1 789 90 - 1 CUGAUCUAAUGCCAGCUCGGGUGAUGAGGAUUUAUUGUAGUUCUCGUCGCUGUCGCUCGAUGCGGCCACUGCAG------AAUAAUUGAUUAAUUA .(((((.(((.....(((((((((((((((((......)))))))))))).(((((.....)))))..))).))------....)))))))).... ( -28.50) >DroPse_CAF1 1209 95 - 1 UAGGUCCAGGGCCAGUUCGGCUGAUGAAGAUUUAUUGUAGUUCUCGUCGCUGUCGCUGGACGCGGCUACUGCGGCACAGGAGAGAG-GAUAAGUUC ...((((.(..(((((.((((.(((((..(((......)))..)))))))))..))))).)((.((....)).))..........)-)))...... ( -31.30) >DroMoj_CAF1 792 90 - 1 CAAAUCCAAUGCCAGCUCAGGUGAUGAAGAUUUAUUGUAAUUCUCGUCGCUGUCGCUCGAUGCGGCCACUGCGA------AAUAUGCGAUUAAUUA ..((((((......((...((((((((..(((......)))..))))))))(((((.....)))))....))..------....)).))))..... ( -22.90) >DroAna_CAF1 1087 95 - 1 CAGAUCCAAAGCCAGGUCGGGCGAUGAAGAUUUAUUGUAGUUCUCAUCGCUGUCGCUGGAUGUGGGCACUGCGGCAAAUGGAUAAG-GAUUAAUUA ..(((((....(((.((((((((((((..(((......)))..)))))))).((((.....))))......))))...)))....)-))))..... ( -31.30) >DroPer_CAF1 1006 95 - 1 UAGGUCCAGAGCCAGUUCGGCUGAUGAAGAUUUAUUGUAGUUCUCGUCGCUGUCGCUGGACGCGGCUACUGCGGCACAGGAGAGAG-GAUUAAUUC ..(((((...((((((.((((.(((((..(((......)))..)))))))))..))))).)((.((....)).))..........)-))))..... ( -31.70) >consensus CAGAUCCAAAGCCAGCUCGGGUGAUGAAGAUUUAUUGUAGUUCUCGUCGCUGUCGCUGGAUGCGGCCACUGCGGCA_AGGAAUAAG_GAUUAAUUA ..((((.....(((((...((((((((..(((......)))..))))))))...))))).(((((...)))))..............))))..... (-18.60 = -18.67 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:05 2006