Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,455,016 – 1,455,136 |
Length | 120 |
Max. P | 0.577032 |
Location | 1,455,016 – 1,455,136 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -19.40 |
Consensus MFE | -17.80 |
Energy contribution | -17.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.92 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577032 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1455016 120 + 27905053 AAAAUCCUUAAAGAGCGCCAGGAAAGAGCAGAGUUUGAAAGGAAUGUUUUGGAAAAAUUUGAAGCCGAACAAAGAAAGCGGGAAGAAUUCGAAAGAAAUAGACAAGAGGAGCUUUUGAUU ..........((((((.((.....((((((...(((....))).)))))).......((((...(((...........)))......(((....))).....)))).)).)))))).... ( -20.80) >DroSec_CAF1 27433 120 + 1 AAAAUCCUUAAAGAGCGCCAGGAAAGAGAAGAGUUUGAAAGAAAUAUUUUGGAAAAAUUUGAAGCCGAACAAAGAAAACGGGAAGAGUUCGAAAGAAAUAGACAAGAGGAGCUUUUGAUU ..........((((((.((.((.....(((...((..(((......)))..))....)))....)).....................(((....)))..........)).)))))).... ( -18.70) >DroSim_CAF1 25716 120 + 1 AAAAUCCUUAAAGAGCGCCAGGAAAGAGAAGAGUUUGAAAGAAAUAUUUUGGAAAAAUUUGAAGCCGAACAAAGAAAACGGGAAGAGUUCGAAAGAAAUAGACAAGAGGAGCUUUUGAUU ..........((((((.((.((.....(((...((..(((......)))..))....)))....)).....................(((....)))..........)).)))))).... ( -18.70) >consensus AAAAUCCUUAAAGAGCGCCAGGAAAGAGAAGAGUUUGAAAGAAAUAUUUUGGAAAAAUUUGAAGCCGAACAAAGAAAACGGGAAGAGUUCGAAAGAAAUAGACAAGAGGAGCUUUUGAUU ..........((((((.((..............((..(((......)))..))....((((...(((...........)))......(((....))).....)))).)).)))))).... (-17.80 = -17.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:56 2006