Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,434,412 – 10,434,562 |
Length | 150 |
Max. P | 0.976173 |
Location | 10,434,412 – 10,434,525 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.22 |
Mean single sequence MFE | -35.18 |
Consensus MFE | -27.00 |
Energy contribution | -29.86 |
Covariance contribution | 2.86 |
Combinations/Pair | 1.10 |
Mean z-score | -2.59 |
Structure conservation index | 0.77 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.976173 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10434412 113 + 27905053 GCAUGCCACAAAAAUGCUGAAAAGCGAAAUGCGGAAACCUCAUAGGAGUACUCAGUACCCAGCAU-------CCAUCCUCGUCGGGCUGCCUCCAGCAUCCGCCACUCGAGGGCAUACAU (.(((((.......((((....))))..(((((....)......((.((((...)))))).))))-------.....((((...((((((.....)))...)))...))))))))).).. ( -33.60) >DroSec_CAF1 97792 113 + 1 GUAUGCCACAAAAAUGCUGAAAAGCGAAAUGCGGAAACCUCAUAGGAGUACCCAAUACCCAGCAU-------CCAUCCUCGUCGGGCUGCCACCAGCAUCCGCCACUCGAGGGAAUACAU ((((..........((((....))))..(((((....)......((.(((.....))))).))))-------...((((((...((((((.....)))...)))...)))))).)))).. ( -30.00) >DroSim_CAF1 86003 113 + 1 GUAUGCCACAAAAAUGCUGAAAAGCGAAAUGCGGAAACCUCAUAGGAGUACCCAGUACCCAGCAU-------CCAUCCUCGUCGGACUGCCACCAGCAUCCGCCACUCGAGGGCAUACAU (((((((.......((((....))))..(((((....)......((.((((...)))))).))))-------.....((((.((((.(((.....))))))).....))))))))))).. ( -37.50) >DroEre_CAF1 94906 113 + 1 GUAUGCCACAAAAAUGCUGAAAAGCGAAAUGCGGAAACCCCAUAGGAGUGCCCAAUACCCAGCAU-------CCAUCCUCAUUGGGCUGCCACCAGCAUCCGCCACUCGGGGGCAUACAU (((((((........(((....)))((...(((((....(((.((((((((..........))))-------...))))...)))((((....)))).)))))...))...))))))).. ( -38.90) >DroYak_CAF1 96368 107 + 1 GCAUGCCACAAAAAUGCUGAAAAGCGAAAUGCGGAAACCUCAUAGGAGUACCCAGUACCCAGCAUGCUGCCUGCAUCCUCUUUGGACUGC-------------CACUCGGGGGCAUGCAC (((((((.......((((....))))..(((((....)......((.((((...)))))).))))....(((((((((.....))).)))-------------.....)))))))))).. ( -35.90) >consensus GUAUGCCACAAAAAUGCUGAAAAGCGAAAUGCGGAAACCUCAUAGGAGUACCCAGUACCCAGCAU_______CCAUCCUCGUCGGGCUGCCACCAGCAUCCGCCACUCGAGGGCAUACAU (((((((.......((((....))))..(((((....)......((.(((.....))))).))))............((((...((((((.....)))...)))...))))))))))).. (-27.00 = -29.86 + 2.86)
Location | 10,434,452 – 10,434,562 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.07 |
Mean single sequence MFE | -34.74 |
Consensus MFE | -23.20 |
Energy contribution | -24.84 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.11 |
Mean z-score | -1.70 |
Structure conservation index | 0.67 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562344 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10434452 110 + 27905053 CAUAGGAGUACUCAGUACCCAGCAU-------CCAUCCUCGUCGGGCUGCCUCCAGCAUCCGCCACUCGAGGGCAUACAUGGAUCCAUAUAUGCAGUGUAGCUGAGGAACAAA---AAAG ..............((.((((((..-------....(((((...((((((.....)))...)))...)))))(((((.(((....))).)))))......)))).)).))...---.... ( -34.40) >DroSec_CAF1 97832 112 + 1 CAUAGGAGUACCCAAUACCCAGCAU-------CCAUCCUCGUCGGGCUGCCACCAGCAUCCGCCACUCGAGGGAAUACAUGGAUCCAUAUAUGCAGUGCAGCUGAGGGACAAAA-AAAAG ....((.....))....((((((((-------(((((((((...((((((.....)))...)))...)))))......)))))).......(((...))))))).)).......-..... ( -29.90) >DroSim_CAF1 86043 113 + 1 CAUAGGAGUACCCAGUACCCAGCAU-------CCAUCCUCGUCGGACUGCCACCAGCAUCCGCCACUCGAGGGCAUACAUGGAUCCAUAUAUGCAGUGUAGCUGAGGAACAAAAAAAAAG ....((.....)).((.((((((..-------....(((((.((((.(((.....))))))).....)))))(((((.(((....))).)))))......)))).)).)).......... ( -34.80) >DroEre_CAF1 94946 112 + 1 CAUAGGAGUGCCCAAUACCCAGCAU-------CCAUCCUCAUUGGGCUGCCACCAGCAUCCGCCACUCGGGGGCAUACAUGGAUCCAUAUAUGCCGUGUAGCUGAGGGGCAAAA-AAAGG ........(((((........((((-------(((.......)))).)))...((((.((((.....))))((((((.(((....))).)))))).....))))..)))))...-..... ( -36.60) >DroYak_CAF1 96408 105 + 1 CAUAGGAGUACCCAGUACCCAGCAUGCUGCCUGCAUCCUCUUUGGACUGC-------------CACUCGGGGGCAUGCACGGCUCCAUAUAUGCAGUGCAGCUUUGGGGCAAAA-AUA-G ....((.((((...)))))).(((((((.((.((((((.....))).)))-------------.....)).)))))))...((((((....(((...)))....))))))....-...-. ( -38.00) >consensus CAUAGGAGUACCCAGUACCCAGCAU_______CCAUCCUCGUCGGGCUGCCACCAGCAUCCGCCACUCGAGGGCAUACAUGGAUCCAUAUAUGCAGUGUAGCUGAGGGACAAAA_AAAAG ....((.....))....((((((.............(((((...((((((.....)))...)))...)))))(((((.(((....))).)))))......)))).))............. (-23.20 = -24.84 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:02 2006