Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,433,415 – 10,433,560 |
Length | 145 |
Max. P | 0.998097 |
Location | 10,433,415 – 10,433,528 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 91.42 |
Mean single sequence MFE | -32.26 |
Consensus MFE | -26.56 |
Energy contribution | -26.68 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -2.88 |
Structure conservation index | 0.82 |
SVM decision value | 3.00 |
SVM RNA-class probability | 0.998097 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10433415 113 + 27905053 UAUGUUUAAGAUAUUCGAAAGAGUGCCUUGGGCCUUUGAAGUUUUUGAAACGGAAAUUGGACAGUUAGAACAUCAGAGGUCUCAAGAUCACUUCGGAUUACUUGUAUUAUCUC ......((((..((((((...((((.(((((((((((((.(((((...(((............)))))))).))))))))).))))..))))))))))..))))......... ( -29.40) >DroSec_CAF1 96843 113 + 1 UAUGGUUAAGAUAUUCAAAAGAGUGCCUUGUGCCUUUGAAGUUUUUGAAACUGAAAUUGGACAGUUAGAACAUCAGAGGUCUCAAGAUCACUUCGGAUUACUUGUAUUAUCUC .(((((((((.((.((....(((((.((((.((((((((.(((((...(((((........)))))))))).))))))))..))))..)))))..)).)))))).)))))... ( -28.90) >DroSim_CAF1 85010 112 + 1 UAUGUUUAAGAUAUUCGAAAGAGUGCCUUGGGCCUUUGAAGUUUUUGAAACUGAAAUUGAACAGUUAGAACAUCAGAGGUCUCAAGAUCCCUUCGGAUUAC-UGUAUUAUCUC ........(((((.((....))(((((((((((((((((.(((((...(((((........)))))))))).))))))))).))))((((....))))...-.))))))))). ( -32.40) >DroEre_CAF1 93923 113 + 1 UAUGCUUAAGAUAUUCGAGCAGAUACCUUGGGCCUUUGAAGUUUUAGAAACUGAAAUUGGACAGUGAAAACAUCAGAGGUCUCAAGAUCACUUCGGAUUACUUGUAUUAUCUC ......((((..(((((((..(((..(((((((((((((.(((((....((((........)))).))))).))))))))).)))))))..)))))))..))))......... ( -32.80) >DroYak_CAF1 95367 113 + 1 UAUGUUUAAGAUAUUCGAGCAAGUACCUUGGGCCUUUGAAGUUUUACACACUGAAAUUGGACAGUGAAAACAUCAGAGGUCUCAGGAUCACUUCGGAUUACUUGUAUUAUCUG ........(((((.....((((((((((.((((((((((.(((((...(((((........)))))))))).)))))))))).)))....(....)..)))))))..))))). ( -37.80) >consensus UAUGUUUAAGAUAUUCGAAAGAGUGCCUUGGGCCUUUGAAGUUUUUGAAACUGAAAUUGGACAGUUAGAACAUCAGAGGUCUCAAGAUCACUUCGGAUUACUUGUAUUAUCUC ......((((..(((((((.......(((((((((((((.(((((...(((((........)))))))))).))))))))).)))).....)))))))..))))......... (-26.56 = -26.68 + 0.12)
Location | 10,433,415 – 10,433,528 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 91.42 |
Mean single sequence MFE | -22.48 |
Consensus MFE | -18.28 |
Energy contribution | -18.68 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.11 |
Mean z-score | -1.35 |
Structure conservation index | 0.81 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556798 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10433415 113 - 27905053 GAGAUAAUACAAGUAAUCCGAAGUGAUCUUGAGACCUCUGAUGUUCUAACUGUCCAAUUUCCGUUUCAAAAACUUCAAAGGCCCAAGGCACUCUUUCGAAUAUCUUAAACAUA ((((((.((....))...(((((((.(((((.(.(((.(((.(((..(((.(........).))).....))).))).)))).)))))))))...)))..))))))....... ( -19.60) >DroSec_CAF1 96843 113 - 1 GAGAUAAUACAAGUAAUCCGAAGUGAUCUUGAGACCUCUGAUGUUCUAACUGUCCAAUUUCAGUUUCAAAAACUUCAAAGGCACAAGGCACUCUUUUGAAUAUCUUAACCAUA ((((((...((((......((.(((.(((((.(.(((.(((.(((..(((((........))))).....))).))).)))).)))))))))).))))..))))))....... ( -22.80) >DroSim_CAF1 85010 112 - 1 GAGAUAAUACA-GUAAUCCGAAGGGAUCUUGAGACCUCUGAUGUUCUAACUGUUCAAUUUCAGUUUCAAAAACUUCAAAGGCCCAAGGCACUCUUUCGAAUAUCUUAAACAUA ((((((.....-...((((....))))((((.(.(((.(((.(((..(((((........))))).....))).))).)))).)))).............))))))....... ( -24.40) >DroEre_CAF1 93923 113 - 1 GAGAUAAUACAAGUAAUCCGAAGUGAUCUUGAGACCUCUGAUGUUUUCACUGUCCAAUUUCAGUUUCUAAAACUUCAAAGGCCCAAGGUAUCUGCUCGAAUAUCUUAAGCAUA ((((((.((....))...(((.((.((((((.(.(((.(((.(((((.((((........))))....))))).))).)))).))))))....)))))..))))))....... ( -22.50) >DroYak_CAF1 95367 113 - 1 CAGAUAAUACAAGUAAUCCGAAGUGAUCCUGAGACCUCUGAUGUUUUCACUGUCCAAUUUCAGUGUGUAAAACUUCAAAGGCCCAAGGUACUUGCUCGAAUAUCUUAAACAUA .(((((.((....))...(((.(..(.(((..(.(((.(((.((((((((((........)))))...))))).))).))).)..)))...)..))))..)))))........ ( -23.10) >consensus GAGAUAAUACAAGUAAUCCGAAGUGAUCUUGAGACCUCUGAUGUUCUAACUGUCCAAUUUCAGUUUCAAAAACUUCAAAGGCCCAAGGCACUCUUUCGAAUAUCUUAAACAUA ((((((.((....))...(((((((.(((((.(.(((.(((.(((..(((((........))))).....))).))).)))).)))))))))...)))..))))))....... (-18.28 = -18.68 + 0.40)
Location | 10,433,454 – 10,433,560 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 95.28 |
Mean single sequence MFE | -26.64 |
Consensus MFE | -22.08 |
Energy contribution | -24.16 |
Covariance contribution | 2.08 |
Combinations/Pair | 1.03 |
Mean z-score | -1.82 |
Structure conservation index | 0.83 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10433454 106 + 27905053 AGUUUUUGAAACGGAAAUUGGACAGUUAGAACAUCAGAGGUCUCAAGAUCACUUCGGAUUACUUGUAUUAUCUCUGUAGUCUUCGGUUUCAGCGACUAAUUGUACA ((((.(((((((.((....((((.((....))..(((((((..((((....(....)....))))....)))))))..)))))).))))))).))))......... ( -26.50) >DroSec_CAF1 96882 106 + 1 AGUUUUUGAAACUGAAAUUGGACAGUUAGAACAUCAGAGGUCUCAAGAUCACUUCGGAUUACUUGUAUUAUCUCUGUAGUCUUCGGUUUCAGCGACUAAUUGUACA ((((.((((((((((....((((.((....))..(((((((..((((....(....)....))))....)))))))..)))))))))))))).))))......... ( -28.60) >DroSim_CAF1 85049 105 + 1 AGUUUUUGAAACUGAAAUUGAACAGUUAGAACAUCAGAGGUCUCAAGAUCCCUUCGGAUUAC-UGUAUUAUCUCUGUAGUCUUCGGUUUCAGCGACUAAUUGUACA ((((.(((((((((((..(..((((..(((....(((..((((.(((....))).))))..)-)).....))))))).)..))))))))))).))))......... ( -27.70) >DroEre_CAF1 93962 106 + 1 AGUUUUAGAAACUGAAAUUGGACAGUGAAAACAUCAGAGGUCUCAAGAUCACUUCGGAUUACUUGUAUUAUCUCUGUAGUCUUCGGUUUCAGCGACUAAUUGUACA ((((...((((((((....((((.((....))..(((((((..((((....(....)....))))....)))))))..))))))))))))...))))......... ( -27.50) >DroYak_CAF1 95406 106 + 1 AGUUUUACACACUGAAAUUGGACAGUGAAAACAUCAGAGGUCUCAGGAUCACUUCGGAUUACUUGUAUUAUCUGUGUAGUCUUCGGUUUCAGCGACUAAUUGUACA .........(.(((((((((((....((..(((.((((.....((((....(....)....)))).....)))))))..))))))))))))).)............ ( -22.90) >consensus AGUUUUUGAAACUGAAAUUGGACAGUUAGAACAUCAGAGGUCUCAAGAUCACUUCGGAUUACUUGUAUUAUCUCUGUAGUCUUCGGUUUCAGCGACUAAUUGUACA ((((.((((((((((....((((.((....))..(((((((..(((((((......)))..))))....)))))))..)))))))))))))).))))......... (-22.08 = -24.16 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:00 2006