Locus 3825

Sequence ID 3R_DroMel_CAF1
Location 10,425,784 – 10,425,890
Length 106
Max. P 0.538009
window6126

overview

Window 6

Location 10,425,784 – 10,425,890
Length 106
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 95.13
Mean single sequence MFE -28.33
Consensus MFE -24.71
Energy contribution -24.65
Covariance contribution -0.06
Combinations/Pair 1.13
Mean z-score -1.54
Structure conservation index 0.87
SVM decision value 0.01
SVM RNA-class probability 0.538009
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10425784 106 + 27905053
UUAGGGCUGAAAGUGAAAUUUCGAAAUGUUGUUUAUGUUUGCUUUUAGCGGGAAAUUCCUCGAUGGUUUCACUAGCUGCAGUUGCGUGAAAUGGAGCUGUGGAAAA
((((.((((((((..((....(((....)))......))..))))))))..((((..((.....)))))).))))(..(((((.(((...))).)))))..).... ( -27.30)
>DroSec_CAF1 89264 106 + 1
UUAGGGCUGAAAGUGAAAUUUCGAAAUGUUGUUUAUGUUUGCUUUUAGCGGGAAAUUCCUCGAUGGUUUCAGUAGCUGCAGUUGCGUGAAAGGGAGCUGUGGAAAA
.....((((((((..((....(((....)))......))..)))))))).((.....))((.((((((((.(((((....))))).......)))))))).))... ( -26.70)
>DroSim_CAF1 76904 106 + 1
UUAGGGCUGAAAGUGAAAUUUCGAAAUGCUGUUUAUGUUUGCUUUUAGCGGGAAAUUCCUCGAUGGUUUCAGUAGCUGCAGUUGCGUGUAAGGGAGCCGGGGAAAA
.....((((((((..((....((......))......))..))))))))......((((((...((((((..((..(((....)))..))..)))))))))))).. ( -29.20)
>DroYak_CAF1 87665 106 + 1
UUAGGGCUGAAAGUGAAAUUUCGAAAUGUUGUUUAUGUUUGCUUUUAGCGGGAAAUUCCUCGCUGGUUUCAGCAGUUGGAGUUGCGUGAAAGGGAGCUGGGGAAAA
.....((((((((..((....(((....)))......))..))))))))......(((((((((..(((((((((......)))).)))))...))).)))))).. ( -30.10)
>consensus
UUAGGGCUGAAAGUGAAAUUUCGAAAUGUUGUUUAUGUUUGCUUUUAGCGGGAAAUUCCUCGAUGGUUUCAGUAGCUGCAGUUGCGUGAAAGGGAGCUGGGGAAAA
.....((((((((..((....(((....)))......))..)))))))).((.....))((.((((((((.(((((....))))).......)))))))).))... (-24.71 = -24.65 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:57 2006