Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,425,572 – 10,425,671 |
Length | 99 |
Max. P | 0.998778 |
Location | 10,425,572 – 10,425,671 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 77.72 |
Mean single sequence MFE | -38.10 |
Consensus MFE | -22.90 |
Energy contribution | -25.08 |
Covariance contribution | 2.18 |
Combinations/Pair | 1.09 |
Mean z-score | -3.05 |
Structure conservation index | 0.60 |
SVM decision value | 3.22 |
SVM RNA-class probability | 0.998778 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10425572 99 + 27905053 AUAUGUGCCCUUUUUUUGAGGUGGGGGGAUGGGAAAUGCCUGUGCUUCAUUUUC-------CAUGACGCGGCACGCAGCGUGAAAAUGCUGCACCCCAUCCGCGGA .......((((((....)))).))(.(((((((...((((.(((..((((....-------.))))))))))).(((((((....)))))))..))))))).)... ( -40.70) >DroSec_CAF1 89064 87 + 1 ----------UUUUUUUGGGAUGGG--GAGUGGAAAUGCCUGUGCUUCAUUUUC-------CAUGACGCGGCACGCAGCGUGAAAAUGCUGCACCCCAUCCGCGGA ----------....(((((((((((--(........((((.(((..((((....-------.))))))))))).(((((((....))))))).)))))))).)))) ( -39.70) >DroSim_CAF1 76706 85 + 1 ----------UUUUUU-GGGGU-GG--GAGUGGAAAUGCCUAUGCUUCAUUUUC-------CAUGACGCGGCACGCAGCGUGAAAAUGCUGCACCCCAUCCGCGGA ----------...(((-(((((-((--(.((.....((((...((.((((....-------.)))).)))))).(((((((....)))))))))))))))).)))) ( -36.30) >DroEre_CAF1 86117 91 + 1 -----GGCCCUUU--U-GGGGC-------AGGGGCAUGCCCGUGCCUCGUUUUCCAUUUGCCAUGACGCGGCACGCAGCGUGAAAAUGCUGCACCCCAUCCGCGGA -----.((((...--.-.))))-------.((((.......(((((.((((.............)))).)))))(((((((....))))))).))))......... ( -42.02) >DroYak_CAF1 87456 84 + 1 AUACUGGCCCUUU--U-GGG------------GGAAUGCUUGUGCUUCAUUUUC-------CAUGACGCGGCACGCAGCGUGAAAAUGCUGCACCCCAUCCGCGGA .......(((...--(-(((------------(........(((((((((....-------.))))...)))))(((((((....))))))).)))))...).)). ( -31.80) >consensus ______GCCCUUUUUU_GGGGU_GG__GAGGGGAAAUGCCUGUGCUUCAUUUUC_______CAUGACGCGGCACGCAGCGUGAAAAUGCUGCACCCCAUCCGCGGA .................(((((..............((((...((.((((............)))).)))))).(((((((....))))))))))))......... (-22.90 = -25.08 + 2.18)
Location | 10,425,572 – 10,425,671 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 77.72 |
Mean single sequence MFE | -33.40 |
Consensus MFE | -23.04 |
Energy contribution | -23.44 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.14 |
Mean z-score | -2.43 |
Structure conservation index | 0.69 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10425572 99 - 27905053 UCCGCGGAUGGGGUGCAGCAUUUUCACGCUGCGUGCCGCGUCAUG-------GAAAAUGAAGCACAGGCAUUUCCCAUCCCCCCACCUCAAAAAAAGGGCACAUAU ...((((((((((.(((((........)))))(((((((.((((.-------....)))).))...))))).)))))))).....(((.......)))))...... ( -37.00) >DroSec_CAF1 89064 87 - 1 UCCGCGGAUGGGGUGCAGCAUUUUCACGCUGCGUGCCGCGUCAUG-------GAAAAUGAAGCACAGGCAUUUCCACUC--CCCAUCCCAAAAAAA---------- ...(.((((((((.(((((........)))))(((((((.((((.-------....)))).))...))))).......)--)))))))).......---------- ( -35.60) >DroSim_CAF1 76706 85 - 1 UCCGCGGAUGGGGUGCAGCAUUUUCACGCUGCGUGCCGCGUCAUG-------GAAAAUGAAGCAUAGGCAUUUCCACUC--CC-ACCCC-AAAAAA---------- ........(((((((((((........)))))(((((((.((((.-------....)))).))...)))))........--..-)))))-).....---------- ( -29.90) >DroEre_CAF1 86117 91 - 1 UCCGCGGAUGGGGUGCAGCAUUUUCACGCUGCGUGCCGCGUCAUGGCAAAUGGAAAACGAGGCACGGGCAUGCCCCU-------GCCCC-A--AAAGGGCC----- (((.....(((((((((((........)))))(((((.((((((.....)))....))).)))))(((....)))..-------)))))-)--...)))..----- ( -37.50) >DroYak_CAF1 87456 84 - 1 UCCGCGGAUGGGGUGCAGCAUUUUCACGCUGCGUGCCGCGUCAUG-------GAAAAUGAAGCACAAGCAUUCC------------CCC-A--AAAGGGCCAGUAU (((.....(((((.(((((........)))))((((....((((.-------....)))).))))........)------------)))-)--...)))....... ( -27.00) >consensus UCCGCGGAUGGGGUGCAGCAUUUUCACGCUGCGUGCCGCGUCAUG_______GAAAAUGAAGCACAGGCAUUUCCACUC__CC_ACCCC_AAAAAAGGGC______ .........((((((((((........)))))(((((((.((((............)))).))...))))).............)))))................. (-23.04 = -23.44 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:56 2006