| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,399,658 – 10,399,768 |
| Length | 110 |
| Max. P | 0.500000 |
| Location | 10,399,658 – 10,399,768 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 82.73 |
| Mean single sequence MFE | -42.42 |
| Consensus MFE | -29.62 |
| Energy contribution | -31.07 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10399658 110 - 27905053 GAAGAGGGCGGGAUUCAGCUGGUGGCCAGUUACCCAGACACGGUAGCUCAACCAGCAGCUCCGUCGCGAGGCAGAAUCAGUCGGUUGAAGCCCAAGGAAGAAAGCAGCCA ......(((..((((((((((.(((..(((((((.......)))))))...))).)))))..(((....))).))))).)))(((((...((...)).......))))). ( -40.30) >DroSec_CAF1 64081 110 - 1 GAAGAGGGCGGGAUUCAGCUGGUGGCCAGUUACCCAGACACGGUGGCUCCACCAGCAGCUCCGUCGCGAGGCAGAAUCAGUCGGUUGAAGCCCAAGGAAGAGAGCAGACA .....((((..(((((.((((((((..(((((((.......)))))))))))))))......(((....))).)))))..((....)).))))................. ( -42.20) >DroSim_CAF1 50237 110 - 1 GAAGAGGGCGGGAUUCAGCUGGUGGCCAGUUACCCAGACACGGUGGCUCCACCAGCAGCUCCGUCGCGAGGCAGAAUCAGUCGGUUGAAGCCCAAGGAAGAGAGCAGCCA ......(((..(((((.((((((((..(((((((.......)))))))))))))))......(((....))).))))).)))(((((...(.(......).)..))))). ( -44.40) >DroEre_CAF1 59649 110 - 1 GAGGAGGGCGAGGUACAACUGGUGGCCAGUUACCCAGCCACGGUGGAUCCACCAGCAGCUCCGUCACGAGGCAGAAUAAGUCGCUUGAAGCCCAAGGAAGAGAGCAGCCA (((((((((..((((..(((((...)))))))))..)))..((((....)))).....)))).))....(((.((.....))((((....((...))....)))).))). ( -39.70) >DroYak_CAF1 59927 110 - 1 GAGGAGGGCGAGGUACAGCUGGUAGCCAGUUACCCAGCCACGGUGGCUCCACCAGUUGCUCCGUCACGGGGCAGAAUCAGUCGGUUGAAGCCCAAGGAAGAGAGCAGCCA ......(((..((((..(((((...)))))))))..)))..((((....)))).((((((((.((...((((..((((....))))...))))...)).).))))))).. ( -44.20) >DroAna_CAF1 43373 104 - 1 UCCAACCACGAC------GUGGCGGACGCCUACCCGGCCCUGGUGGCCCCGCCAGCUGCUCCUGCGCGCGGCAGGAUCAGCAGGCUCAAGCCAAAAGAGGAGAGCAGCCA ............------.((((((..(((.(((.......)))))).))))))((((.((((((.....)))))).)))).(((((...((......))...).)))). ( -43.70) >consensus GAAGAGGGCGAGAUUCAGCUGGUGGCCAGUUACCCAGACACGGUGGCUCCACCAGCAGCUCCGUCGCGAGGCAGAAUCAGUCGGUUGAAGCCCAAGGAAGAGAGCAGCCA ......(((........((((((((..(((((((.......))))))))))))))).(((((.((....(((..((((....))))...)))....)).).)))).))). (-29.62 = -31.07 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:52 2006