Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,371,506 – 10,371,599 |
Length | 93 |
Max. P | 0.642357 |
Location | 10,371,506 – 10,371,599 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 80.86 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -12.86 |
Energy contribution | -14.00 |
Covariance contribution | 1.14 |
Combinations/Pair | 1.15 |
Mean z-score | -2.24 |
Structure conservation index | 0.53 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10371506 93 + 27905053 AGCCAAAUUUGUUUGACGAAUUGCCAGAACAUCAGAGGAAUUUGUGCCAAAAGCGCGCUUACAAAGUUUGGCAAAUAAAU-UGUCA-AAUGC------CUC ..........(((((((((.((((((((.......(((....(((((.....))))))))......)))))))).....)-)))))-)))..------... ( -21.52) >DroVir_CAF1 48697 87 + 1 GUCCAAAUUUGUUUGAGACAUUGCCA-AACAUCAAAGCAAUUUGUGCCUAG------CAAAGUAAACGAGCAAAAUAAAU-UGCCAAAAUGU------CAC .......((((((((..((.((((..-..((.((((....))))))....)------))).))...))))))))......-...........------... ( -15.00) >DroPse_CAF1 34799 92 + 1 GGCCAAAUUUGUUUGACGAAUUGCCAAAACAUCCGAGCAAUUUGUGCCCCGAGCGCG--AGCGAAGUUUGGCAAAUAAAUUUGCCA-AAUGU------CAC (((((((....))))((((((((((.........).))))))))))))....((...--.))((.((((((((((....)))))))-))).)------).. ( -30.20) >DroEre_CAF1 30712 93 + 1 GGCCAAAUUUGUUUGACGAAUUGCCAGAACAUCAGAGCAAUUUGUGCCAAAAACGCGCUUACAAAGUUUGGCAAAUAAAU-UGUCA-AAUGC------CUC (((....(((((..(((((((((((.(.....).).)))))))))((.......)).)..)))))(((((((((.....)-)))))-)))))------).. ( -23.60) >DroYak_CAF1 31114 99 + 1 GGCCAAAUUUGUUUGACGAAUUGCCAGAACAUCAGAGCAAUUUGUGCCAAAAACGCGCUUACAAACUUUGGCAAAUAAAU-UGUCA-AAUGCUGCAUGCUC (((..((((((.....))))))))).........(((((....((((.......))))........((((((((.....)-)))))-)).......))))) ( -22.50) >DroPer_CAF1 31603 92 + 1 GGCCAAAUUUGUUUGACGAAUUGCCAAAACAUCUGAGCAAUUUGUGCCCCGAGCGCG--AGCGAAGUUUGGCAAAUAAAUUUGCCA-AAUGU------CAC (((((((....))))(((((((((((.......)).))))))))))))....((...--.))((.((((((((((....)))))))-))).)------).. ( -31.80) >consensus GGCCAAAUUUGUUUGACGAAUUGCCAGAACAUCAGAGCAAUUUGUGCCAAAAGCGCGCUAACAAAGUUUGGCAAAUAAAU_UGCCA_AAUGC______CAC .(((((((((.....(((((((((............)))))))))((.......)).......)))))))))............................. (-12.86 = -14.00 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:50 2006