Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,454,286 – 1,454,406 |
Length | 120 |
Max. P | 0.966234 |
Location | 1,454,286 – 1,454,406 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.67 |
Mean single sequence MFE | -48.46 |
Consensus MFE | -41.52 |
Energy contribution | -42.28 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.22 |
Mean z-score | -1.88 |
Structure conservation index | 0.86 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.966234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1454286 120 + 27905053 GCAGCUCAGGGAGCAGGACCGGGAACGGCAGAGGACUCUGCUGGCCGAGCAGCAUAGGCUGGACAGGCAAAGUCUGAAAAGGGCGCGUCAACUGCGUGACCGACGUUUGCGGGAGCAGCA ((.((((.(.((((.((((......(((((((....)))))))(((...((((....))))....)))...)))).....((.(((((.....))))).))...)))).)..)))).)). ( -47.00) >DroSec_CAF1 26603 120 + 1 GCAGCUCAGGGAGCAGGACCGGAAGCGGCAGAGGACUCUGUUGGCCGAGCAGCAGAGGCUGGACAGGCAGAGUCUGGAAAAGGCGCGUCAAGUGCGCGACCGACGCUUGCGGGAACAGCA ((.((((...))))....(((.(((((.....((((((((((..((.(((.......)))))...))))))))))......(((((((.....))))).))..))))).))).....)). ( -51.60) >DroSim_CAF1 24887 120 + 1 GCAGCUCAGGGAGCAGGACCGGAAGCGGCAGAGGACUUUGCUGGCCGAGCAGCAGAGGCUGGACAGGCAGAGUCUGGAAAAGGCGCGUCAAGUGCGCGACCGACGCUUGCGGGAACAGCA ((.((((...))))....(((.(((((.....((((((((((..((.(((.......)))))...))))))))))......(((((((.....))))).))..))))).))).....)). ( -51.50) >DroEre_CAF1 28340 120 + 1 GCAGCUCAGGGAGCAGGAACGAGAGCGGCAGAGGACUCUGCAGGCCGAGCAGCAGAUGCUGGAAAGGCAGGGUCUGGAAAAGGCGCGUCAACUGCGCGACCGACGAUUGCGGGAGCAGCA ((.((((.....((((....((..(((.(...(((((((((...((.((((.....))))))....)))))))))......).))).))..))))....(((.......))))))).)). ( -46.80) >DroYak_CAF1 26765 120 + 1 GCAGCUCAGGGAGCAGGAGCGAGAACGUCAGAGGACUCUGCUGGCCAAAGAGCAGAUGCUGGAAAAGCAGCGCCUGGAAAAGGCGCGUCAACUACGCGACCGACGAUUGCGGGAGCAGCA ((.((((.....((((..(((....(((.((..(((((((((........))))))((((.....))))((((((.....)))))))))..)))))....)).)..))))..)))).)). ( -45.40) >consensus GCAGCUCAGGGAGCAGGACCGGGAGCGGCAGAGGACUCUGCUGGCCGAGCAGCAGAGGCUGGACAGGCAGAGUCUGGAAAAGGCGCGUCAACUGCGCGACCGACGAUUGCGGGAGCAGCA ((.((((...))))....(((.(((((.....((((((((((..((.(((.......)))))...))))))))))......(((((((.....))))).))..))))).))).....)). (-41.52 = -42.28 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:54 2006