Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,370,932 – 10,371,035 |
Length | 103 |
Max. P | 0.684297 |
Location | 10,370,932 – 10,371,035 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 81.15 |
Mean single sequence MFE | -26.73 |
Consensus MFE | -17.15 |
Energy contribution | -18.37 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.17 |
Mean z-score | -1.80 |
Structure conservation index | 0.64 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684297 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10370932 103 + 27905053 ACACAGA---CAUGCAGGCAAACAGACCAAAUCGAUACGAAGGAGGCUGUCAAGUCUGCACCAACCCACUCUAAAUCAUCGUUGCGGAUAACCGAAGAUGAUGAUG .......---..(((((((..((((.((...(((...)))....))))))...)))))))..............(((((((((.(((....)))..))))))))). ( -28.40) >DroSec_CAF1 34840 103 + 1 ACACAAA---CAUGCAGGCAAACAGACCAAAUCGAUACAGAAGAGGCUGUCAAGCCAGCACCAACCCACUCUAAAUCAUCGUUGCGGAUAACCGAAGAUGAUGAUG .......---..(((.(((..((((.((...((......))...))))))...))).)))..............(((((((((.(((....)))..))))))))). ( -26.60) >DroSim_CAF1 29748 103 + 1 ACACAAA---CAUGCAGGCAAACAGACCAAAUCGAUACGGAGGAGGCUGUCAAGCCAGCUCCAACCCACUCUAAAUCAUCGUUGCGGAUAACCGAAGAUGAUGAUG .......---......((........))..........((((..((((....))))..))))............(((((((((.(((....)))..))))))))). ( -26.50) >DroEre_CAF1 30119 103 + 1 ACACAAA---CAUGCAGGCAAACAGACCAAAUCGAUACGUAGGUGGCUGUCAGGUCUGCUCCGACCCACUCUAAAUCAUCGUUGCGGAUAACCAAGGAUGAUGAUA .......---...((((((..((((.(((...((...))....)))))))...))))))...............((((((.(((.(.....)))).)))))).... ( -27.30) >DroYak_CAF1 30561 103 + 1 ACACAAA---CAUGCAGGCAAACCGACCAAAUCGAUACGAAGGAGGCUGUCAAGUCUGCUCCAACCCACUCUAAAUCAUCGUUGCGGAUAACCAAAGAUGAUGAUG .......---...((((((....(((.....)))...(....)..........))))))...............(((((((((..((....))...))))))))). ( -21.50) >DroPer_CAF1 30973 92 + 1 ACACAGAGCAGAUGUGGGCAGGCAAGCUGAAUCGAUGG--GAGAGGCAGGCACUCUUCCACCA------------ACGUCGUUGGGGAUAACCCCAGAUGAAGAUG .((((.......))))(((......)))..((((.(((--(((((.......)))))))).).------------.((((..(((((....)))))))))..))). ( -30.10) >consensus ACACAAA___CAUGCAGGCAAACAGACCAAAUCGAUACGAAGGAGGCUGUCAAGCCUGCACCAACCCACUCUAAAUCAUCGUUGCGGAUAACCGAAGAUGAUGAUG .............((((((..((((.((................))))))...))))))...............(((((((((..((....))...))))))))). (-17.15 = -18.37 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:48 2006