Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,361,790 – 10,361,895 |
Length | 105 |
Max. P | 0.714475 |
Location | 10,361,790 – 10,361,895 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 86.45 |
Mean single sequence MFE | -37.48 |
Consensus MFE | -25.06 |
Energy contribution | -26.14 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.12 |
Mean z-score | -2.20 |
Structure conservation index | 0.67 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10361790 105 + 27905053 UUGGUGCCCAGGACUUCGUGGCCAUGGAUGGCCAUGGCAAAAUGGCCUCUUCAGGCCGUCGAACUGGGCGAGGACUUGGCCAAGUAUAAUCUCUCAGAGAAUUGU (((((((((((...(((((((((.((((.((((((......))))))..))))))))).))))))))))((....)).)))))......((((...))))..... ( -42.20) >DroSec_CAF1 20314 101 + 1 UCGGUGGCCAGGACUUCGUGG----AGAUGGCCAUGGCAAAAUGGCCACUUCAGGCCGUCGAACUGGGCGAGGACUUGGUCAAAUGUAAUCUCUCAGAGAAUUGU (((..((((..(....).(((----((.(((((((......))))))))))))))))..))).(((((.((..((..........))..)).)))))........ ( -39.20) >DroSim_CAF1 20473 101 + 1 UCGGUGGCCAGGACUUCGUGG----AGAUGGCCAUGGCAAAAUGGCCACUUCAGGCCGUCGAACUGGGCGAGGACUUGGUCAAAUGUAAUCUCUCAGAGAAUUGU (((..((((..(....).(((----((.(((((((......))))))))))))))))..))).(((((.((..((..........))..)).)))))........ ( -39.20) >DroEre_CAF1 20486 100 + 1 UUGGUGGGCAGGACUUUGUGG----AGAUGCCCAUGGAA-AAUGGGCACUUCAGGCCGUCGAACUGCGAGAGGUCUUGGCAAGAUACAAGCUCUUGGUGAAUAGU .......(((((((..(.(((----((.(((((((....-.)))))))))))).)..)))...))))(((((..((((........))))))))).......... ( -33.30) >DroYak_CAF1 21302 101 + 1 UUGGUGGCCAGGACUUGGUGG----AGAUGCCCAUGGAAAAAUGGCCACUUCAGGCCGUCGAACUGCGAGAGGUCUUGGCCAGAUAUAAGCUCUUAGAGAAUAGU ....(((((((((((((((((----((.((.((((......)))).))))))..))).(((.....))).))))))))))))........(((...)))...... ( -33.50) >consensus UUGGUGGCCAGGACUUCGUGG____AGAUGGCCAUGGCAAAAUGGCCACUUCAGGCCGUCGAACUGGGCGAGGACUUGGCCAAAUAUAAUCUCUCAGAGAAUUGU ....((((((((.((((((.........(((((((......)))))))...(((.........))).)))))).))))))))....................... (-25.06 = -26.14 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:46 2006