Locus 3815

Sequence ID 3R_DroMel_CAF1
Location 10,359,884 – 10,359,975
Length 91
Max. P 0.500000
window6113

overview

Window 3

Location 10,359,884 – 10,359,975
Length 91
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 85.84
Mean single sequence MFE -26.23
Consensus MFE -20.58
Energy contribution -21.32
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.78
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10359884 91 + 27905053
GGUGCUUUUGGGCGCCACCGUGCGCCCUUCACCCCUUUUCACCACGGCAUC-----------AGCCCCUUUCUAGCCCCCUUUUGCAUUUAAGCCAUUGGCA
((((.....((((((......))))))..))))............(((...-----------.)))........(((.......((......))....))). ( -24.30)
>DroSec_CAF1 18375 90 + 1
GGUGCUUUUGGGCGACACUGUGCGCCCUUCACCCCUUUUCAGCCC-GCUAC-----------AGCCCCUUUUUAGCCCCCUUUUGCAUUUAAGGCAUUGGCA
((((.....(((((.(.....))))))..))))........(((.-((...-----------.)).((((....((........))....))))....))). ( -22.30)
>DroSim_CAF1 18547 91 + 1
GGUGCUUUUGGGCGCCACUGUGCGCCCUUCACCCCUUUUCAGCCCGGCUCC-----------AGCCCCUUUCUAGCCCCCUUUUGCAUUUAAGGCAUUGGCA
((((.....((((((......))))))..))))........(((.(((...-----------.)))((((....((........))....))))....))). ( -28.60)
>DroEre_CAF1 18564 101 + 1
GGUGCUUUUGGCCGCCACUGGGCGCCCUUCACCCCU-UUCAGCCGAGUUUCAGGCGAGCUGCAGCCCCUUUCUAGCCCCCUUUUGCGUUUAAGGCAUUGGCA
((.(((...((((((((((.(((.............-....))).)))....)))).)))..))).))......(((.((((........))))....))). ( -29.73)
>consensus
GGUGCUUUUGGGCGCCACUGUGCGCCCUUCACCCCUUUUCAGCCCGGCUUC___________AGCCCCUUUCUAGCCCCCUUUUGCAUUUAAGGCAUUGGCA
((((.....((((((......))))))..))))..............................(((((((....((........))....))))....))). (-20.58 = -21.32 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:45 2006