Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,347,887 – 10,348,007 |
Length | 120 |
Max. P | 0.561293 |
Location | 10,347,887 – 10,348,007 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.50 |
Mean single sequence MFE | -30.83 |
Consensus MFE | -21.14 |
Energy contribution | -23.22 |
Covariance contribution | 2.08 |
Combinations/Pair | 1.12 |
Mean z-score | -1.97 |
Structure conservation index | 0.69 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10347887 120 - 27905053 UCCAUAUAGGUGAUAUCGCCUUUACGGUACAGUUCCAUUGCCCUAUUGAUCACAAUGUUCGAUUCGGGAUCUGAAUCAGUCUUUGGCAAUGGAUUGACUUUUUUAUUAACCACCUGAAAA ......((((((.(((((......)))))((((.((((((((.(((((....)))))...(((((((...))))))).......))))))))))))..............)))))).... ( -34.80) >DroSec_CAF1 6457 120 - 1 UCCAUAUAGGUGAUAUCGCCUUUGCGGUACAGUUCCAUUGCCCUAUUGAUCACAAUGUUUAAUUCGGGAUCUGAAUCAGUCUUUGGCGAUGGAUUGACUUUUUUAUUAACCACCUGAGGA (((...((((((.((((((....))))))((((.((((((((.(((((....)))))....((((((...))))))........))))))))))))..............)))))).))) ( -34.10) >DroSim_CAF1 6479 120 - 1 UCCAUAUAGGUGAUAUCGCCUUUGCGGUACAGUUCCAUUGCCCUAUUGAUCACAAUGUUCAAUUCGGGAUCUGAAUCAGUCUUUGGCGAUGGAUUGACUUUUUUAUUAACCACCUGAGAA ......((((((.((((((....))))))((((.((((((((..((((((((....((((......)))).)).))))))....))))))))))))..............)))))).... ( -33.90) >DroEre_CAF1 6508 120 - 1 UCCAUAUAGGAUAUAUCGCCCUUGCGGUACAGUUCCAUUGCCCGAUUUAUCACAAUAUUCAUUUCCGGAUCUGAAUCUCUCUCUGGCGACAGGUCGACCUUUUUACUAACCACCUGGGCA ........(((..((((((....))))))....)))..(((((((((((.......((((......)))).)))))).......(((((....))).))................))))) ( -24.30) >DroYak_CAF1 6851 118 - 1 UCCAUAUAGGAAAUAUCGCCCUUGCGGUAAAGUUCCAUUGCCCGAUUUAUCACAAUGUUCAUUUCGGGAUCUGAAUCACUCUCUGGCGAAAGGGUGACCUUUUUAUUAACCACCUGA--A .(((....((((.((((((....))))))...))))....(((((..................)))))...............))).((((((....))))))..............--. ( -27.07) >consensus UCCAUAUAGGUGAUAUCGCCUUUGCGGUACAGUUCCAUUGCCCUAUUGAUCACAAUGUUCAAUUCGGGAUCUGAAUCAGUCUUUGGCGAUGGAUUGACUUUUUUAUUAACCACCUGAGAA ......((((((.((((((....))))))....(((((((((..((((((((....((((......)))).)).))))))....))))))))).................)))))).... (-21.14 = -23.22 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:44 2006