| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,347,466 – 10,347,581 |
| Length | 115 |
| Max. P | 0.644350 |
| Location | 10,347,466 – 10,347,581 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.50 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -19.10 |
| Energy contribution | -18.46 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10347466 115 - 27905053 AUUGUGGUUUCUUAGAACAGGGUAAAAAAUCAGAAAAGCUUAUCAAACAAUA-CCUUGAUUAG----AUGGCUUACGGGCGGCUAUUUUAAAAGACCAUCUAAGCAUCUCUGGAACCACA ..(((((((((..(((.(((((((..........................))-))))).((((----(((((((.................))).))))))))...)))..))))))))) ( -30.70) >DroSec_CAF1 6034 115 - 1 AUUGUGGUUUCUUGGAAAAGAAUUCAAAAUCAGAACAGCUUAUCAAACAAUA-CCUUGAUUAG----AUGGCUUACGGGCGGCUAUUUUAAACGACCAUCUGAGCAUCUCUGGAACCACA ..(((((((((((....))))........(((((.((.((.(((((......-..))))).))----.))(((((..((((...........)).))...)))))...)))))))))))) ( -28.80) >DroSim_CAF1 6052 119 - 1 AUUGUGGUUUCUUGGAAAAGAGUUCAAAAUCAGAACAGCUUAUCAAACAAUA-CCUUGAUUAGAUAGAUGGCUUACGGGCGGCUAUUUUAAACGACCAUCUGAGCAUCUCUGGAACCACA ..(((((((((..(((.....((((.......)))).(((((((((......-..))))..((((((.(.(((....))).)))))))............))))).)))..))))))))) ( -30.30) >DroEre_CAF1 6104 115 - 1 AUUGUGGUUUCUAAGAAAGGAAUCCAUAAUCACAACAGUUUAUCAAACAGUA-CCUUGAGUAG----AUGGCUUACGAGCGGCUAUUCUGAACGACCAUCUGAGCAUGUCUGGAACCACA (((((((.((((......)))).))))))).................(((.(-(..((..(((----((((....((..(((.....)))..)).)))))))..)).)))))........ ( -25.60) >DroYak_CAF1 6430 115 - 1 AUUGUGGUUUCUAAGAAGAGAAUCCAAAUUCAGAACAGUUUAUCAUACAAUAAACUUAAGUA-----AUAACUUACGAGCGGCUAUUCUGAAGGACCAUUUGAGCAUCUCUGGAACCACA ..(((((((((..(((.(.((((.....(((((((.(((((((......)))))))(((((.-----...)))))..........))))))).....))))...).)))..))))))))) ( -28.60) >consensus AUUGUGGUUUCUUAGAAAAGAAUCCAAAAUCAGAACAGCUUAUCAAACAAUA_CCUUGAUUAG____AUGGCUUACGGGCGGCUAUUUUAAACGACCAUCUGAGCAUCUCUGGAACCACA ..(((((((((..(((...((........))......(((((............................(((....)))(((..........).))...))))).)))..))))))))) (-19.10 = -18.46 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:43 2006