Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,346,867 – 10,346,986 |
Length | 119 |
Max. P | 0.609238 |
Location | 10,346,867 – 10,346,986 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 92.77 |
Mean single sequence MFE | -31.24 |
Consensus MFE | -24.50 |
Energy contribution | -25.10 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.15 |
Mean z-score | -1.56 |
Structure conservation index | 0.78 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10346867 119 + 27905053 GGAUUUAUUUCUUAUGGAGUCGCCGAAGGUUAUAUUUCCUGAUGCUAAAGAUUCCCGGACCCAUAGGACUACCCAUUUUGGGUAGCUCCCUGGAAAAUAUCAUCACCUAUAAACGUAAA (((..(((..(((.(((.....))).)))..)))..)))(((((.((....((((.((.((....)).((((((.....))))))...)).))))..)).))))).............. ( -29.30) >DroSec_CAF1 5435 119 + 1 GGAUAUAUUUCUUAUGGAGUCGCCGAAGGUUAUAUUUGCUGAUGCUAAGGAUUCCCGGACCCAUAGGACUACCCAUUUUGGGUAGUUCCCUGGAAAAUAUUAUCACCUAUAAACGUAAA .((((..((((((((((.(((((....(((.......)))...))...((....)).))))))))(((((((((.....)))))))))...)))))....))))............... ( -31.40) >DroSim_CAF1 5453 119 + 1 GGAUAUAUUUCUUAUGGAGUCGCCGAAGGUUAUAUUUGCUGAUGCUAAGGAUUCCUGGACCCAUAGGACUACCCAUUCUGGGUAGUUCCCUGGAAAAUAUCAUCACCUAUAAACGUAAA .(((((.((((((((((.(((.....(((.....((.((....)).)).....))).))))))))(((((((((.....)))))))))...)))))))))).................. ( -33.00) >DroEre_CAF1 5513 119 + 1 GGAUAUAUUUCUUAUGGAGCCGCCGAAGGCUAUAUUUGCUCAUGCUAAGGAUACCCGGACCCAUAGGGCUACCCAUUCUUGGCAGUUCCUUGGAAAAUAUCAUCACCUAUAAACGUAAA .(((((.(((((...(((((.(((...)))............((((((((((....((.(((...)))))....)))))))))))))))..)))))))))).................. ( -32.10) >DroYak_CAF1 5865 119 + 1 GGAUAUAUUUCUUAUGGAGUCGCCGAAGGCUGUAUUUGCUAAUGCUAAGGAUGCCCGGACCCAUAGGGCUGCCCAUUCUUGGUAGUUCCCUCGAAAAUAUCAUCACCUAUAAACGUAAA .(((((.((((.(((((.((((((...))).((((((((....))...))))))...))))))))((((((((.......))))))))....))))))))).................. ( -30.40) >consensus GGAUAUAUUUCUUAUGGAGUCGCCGAAGGUUAUAUUUGCUGAUGCUAAGGAUUCCCGGACCCAUAGGACUACCCAUUCUGGGUAGUUCCCUGGAAAAUAUCAUCACCUAUAAACGUAAA .(((((.((((.(((((.(((((....(((.......)))...))...((....)).))))))))(((((((((.....)))))).)))...))))))))).................. (-24.50 = -25.10 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:42 2006