Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,343,924 – 10,344,044 |
Length | 120 |
Max. P | 0.535237 |
Location | 10,343,924 – 10,344,044 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.44 |
Mean single sequence MFE | -42.53 |
Consensus MFE | -34.08 |
Energy contribution | -34.17 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.15 |
Mean z-score | -1.99 |
Structure conservation index | 0.80 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10343924 120 - 27905053 CUUCACCGAUUCGGAUGCCUCUAUUUUCGAGGCAUUUGCCAUUUUCUGUGGCUUGGGCAUUCACAACACCCAGAUGUACGAGAAUGCCUGCAAGUUGAUGGCCAAGCAGAAGGUGGCCCU ............(((((((((.......)))))))))(((((((((((((((((((((((((.(.(((......)))..).))))))))).........))))..))))))))))))... ( -44.60) >DroVir_CAF1 6668 120 - 1 CUUCACCGAAUCGGAUGCCUCCAUAUUUGAGGCGUUCGCCAUAUUCUGCGGACUUGGCAUACACAACACACAGAUGUAUGAGAACGCCUGCAAGCUGAUGGCCAAGCAGAAGGUGGCGCU ............(((((((((.......)))))))))(((((.((((((((......(((((((........).))))))......)).....((.....))...)))))).)))))... ( -40.40) >DroGri_CAF1 8879 120 - 1 CUUCUCCGAAUCGGAUGUGUCGAUAUUCGAGGCAUUUGCCAUAUUCUGUGGCCUGGGCAUCCACAACACGCAGAUGUACGAGAACGCCUGCAAGCUGAUGGCCAAGCAGAAGGUGGCGCU ............((((((.(((.....))).))))))(((((.(((((((((((((....)))......((((.(((......))).))))........))))..)))))).)))))... ( -41.50) >DroWil_CAF1 6539 120 - 1 GUUUACCGAAUCGGAUGCCUCGAUUUUUGAGGCUUUUGCCAUAUUCUGCGGCCUGGGCAUACACAAUACUCAAAUGUAUGAGAAUGCCUGCAAAUUGAUGGCCAAGCAGAAGGUGGCCCU .....(((...)))..(((((((...)))))))....(((((.((((((((((.((((((.(...((((......))))..).)))))).(.....)..))))..)))))).)))))... ( -42.60) >DroMoj_CAF1 2556 120 - 1 CUUUACCGAAUCGGAUGCAUCCAUAUUCGAGGCAUUCGCCAUAUUCUGCGGCCUGGGCAUACACAACACGCAGAUGUACGAGAACGCCUGCAAGCUGAUGGCCAAGCAGAAGGUGGCAUU ............((((((.((.......)).))))))(((((.(((((((((((.(((.(....)....((((.(((......))).))))..))).).))))..)))))).)))))... ( -40.30) >DroAna_CAF1 2844 120 - 1 CUUCACCGAGUCGGAUGCCUCGAUCUUUGAGGCCUUCGCCAUCUUCUGCGGGCUGGGCAUCCACAACACCCAGAUGUACGAGAACGCCUGCAAGCUGAUGGCCAAGCAGAAGGUGGCCCU ..(((((...(((((.(((((((...))))))).)))((((((..((((((((((((...........))))...((......)))))))).))..))))))......)).))))).... ( -45.80) >consensus CUUCACCGAAUCGGAUGCCUCGAUAUUCGAGGCAUUCGCCAUAUUCUGCGGCCUGGGCAUACACAACACCCAGAUGUACGAGAACGCCUGCAAGCUGAUGGCCAAGCAGAAGGUGGCCCU ............(((((((((.......)))))))))(((((.((((((....(((.(((.((.......(((.(((......))).))).....))))).))).)))))).)))))... (-34.08 = -34.17 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:40 2006