Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,452,467 – 1,452,572 |
Length | 105 |
Max. P | 0.611538 |
Location | 1,452,467 – 1,452,572 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -37.26 |
Consensus MFE | -25.29 |
Energy contribution | -25.37 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.34 |
Mean z-score | -1.60 |
Structure conservation index | 0.68 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1452467 105 + 27905053 CCAAUACCCACUGUUCCAGUA---------GGUCGGUGGAGAGGUCUCUACGGACUCAUCGGAAU------CAUCUGGCUUUGCCUCGUUCAAAGUGGGAGCCCCUGAAUCCGCUGGGGC ......(((((((((((.((.---------.(((.((((((....)))))).)))..)).)))))------.....(((...)))........)))))).(((((..........))))) ( -42.80) >DroSec_CAF1 25034 105 + 1 CCAAUACCCACUGCUCCAGUC---------GAUCGGUGGAGAGGUCUCUACGGACUCAUCGGAAU------CCUCUGGAUUUGACUCGUUCAAAGUGAGAGCUCCUGAAUCCGCUGGGGC ............((((((((.---------.....((((((....))))))(((.(((..(((..------.((((.(.(((((.....))))).).)))).)))))).))))))))))) ( -36.00) >DroSim_CAF1 23342 105 + 1 CCAAUACCCACUGCUCCAGUC---------GAUCGGUGGAGAGGUCUCUACGGACUCAUCGGAAU------CCUCUGGAUUUGACUCGUUCAAAGUGAGAGCUCCUGAAUCCGCUGGGGC ............((((((((.---------.....((((((....))))))(((.(((..(((..------.((((.(.(((((.....))))).).)))).)))))).))))))))))) ( -36.00) >DroEre_CAF1 26617 111 + 1 CCAAAACUCACUGUUCCAGUC---------GAUUGACGGAGAGGUCUCUACGGACCCAUCGGAACCCUGGCUCUCUGCUUUUGUUUCAUUUAAAGUGGGAGCUCCUGAAUCCAGUGGGGC ......(((((((((((.(((---------....))).((..(((((....)))))..)))))))...(((((.(..((((..........))))..)))))).........)))))).. ( -36.50) >DroYak_CAF1 25051 114 + 1 CCAAAACUCAUUGUUCCAGUCUAUUGUGUCGACUGGUGUAGAGGUCUCUACGGUCCAAUUGGAAU------UCUCUGGCUUUGCUGUAUUCAAAGUGGGAGCUUCUGAAUUCGUUGGAGU ((.............((((((.........)))))).(((((....)))))))((((((..((((------((...(((((..((........))..).))))...)))))))))))).. ( -35.00) >consensus CCAAUACCCACUGUUCCAGUC_________GAUCGGUGGAGAGGUCUCUACGGACUCAUCGGAAU______CCUCUGGAUUUGACUCGUUCAAAGUGGGAGCUCCUGAAUCCGCUGGGGC ............((((((((............((.((((((....)))))).))......(((.........((((.((((((.......)))))).))))........))))))))))) (-25.29 = -25.37 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:53 2006