Locus 3806

Sequence ID 3R_DroMel_CAF1
Location 10,331,446 – 10,331,549
Length 103
Max. P 0.514704
window6101

overview

Window 1

Location 10,331,446 – 10,331,549
Length 103
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 92.17
Mean single sequence MFE -25.73
Consensus MFE -21.94
Energy contribution -22.34
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.22
Structure conservation index 0.85
SVM decision value -0.04
SVM RNA-class probability 0.514704
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10331446 103 + 27905053
AAAUGGUUCAGGUGGCCCGAUUUCUACUCUGUAAUCUCAGUGGCCGCCUUAGCCACACAGAAAGAAAAAGUGAU-CACUAAUGAUGAUGGAAUACGUUUUAAUU
...(((((.(((((((((((((.(......).))))...).)))))))).)))))...((((.......((.((-((....)))).))........)))).... ( -25.16)
>DroSec_CAF1 188255 104 + 1
AAAUGGUUCAGGUGGCCCGAUUUCUACUCUGUAAUCUCAGUGGCCGCCUUAGCCACACAGAAAGAAAAAGUCAUUCACUAAUGAUGAUGGAUUACGAUUUAAUU
...(((((.(((((((((((((.(......).))))...).)))))))).)))))..............((((((.......))))))................ ( -25.50)
>DroSim_CAF1 188479 103 + 1
AAAUGGUUCAGGUGGCCCGAUUUCUACUCUGUAAUCUCAGUGGCCGCCUUAGCCACACAGAGAGAAAAAGUCAU-CACUAAUGAUGAUGGAUUACGAUUUAAUU
...(((((.(((((((((((((.(......).))))...).)))))))).)))))..............(((((-((....)))))))................ ( -29.10)
>DroEre_CAF1 188677 101 + 1
AAAUGGUUCAGGUGGCCUGAUUUCUACUCUGUAAUCUCGCUGGCCGCCUUUGCCACACAGAAAGAAAAAGUUA---AGUAACGAUGAUGGAUUGCGUUUUAAUU
...((((..((((((((.((((.(......).)))).....))))))))..)))).............(((((---((...((((.....))))...))))))) ( -25.30)
>DroYak_CAF1 198657 103 + 1
AAAUGGUUCAGGUGGCCCGAUUUCUACUCUGUAAUCUCGGUGGCCGCCUUUGCCACACAGAAAGAAAAAGCUAG-CACUAAUGAUGAUGGAUUGCACUUUAAUU
...((((..(((((((((((((.(......).))))...).))))))))..)))).....((((......(((.-(((....).)).)))......)))).... ( -23.60)
>consensus
AAAUGGUUCAGGUGGCCCGAUUUCUACUCUGUAAUCUCAGUGGCCGCCUUAGCCACACAGAAAGAAAAAGUCAU_CACUAAUGAUGAUGGAUUACGAUUUAAUU
...(((((.((((((((.((((.(......).)))).....)))))))).)))))................................................. (-21.94 = -22.34 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:33 2006