Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,327,941 – 10,328,033 |
Length | 92 |
Max. P | 0.896823 |
Location | 10,327,941 – 10,328,033 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 75.76 |
Mean single sequence MFE | -21.76 |
Consensus MFE | -11.58 |
Energy contribution | -13.34 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.15 |
Mean z-score | -2.02 |
Structure conservation index | 0.53 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896823 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10327941 92 - 27905053 AUAAGACAAUUAUACCCUUAUUCGCGGUAUUUUUGUCCGGGGAGUCGUGCUCUUUCCAAAUGCCUGUAUACAUUGCAUUUCAUUGGCACUCA ....(((((..((((((......).)))))..))))).((..((.......))..))...((((((((.....)))).......)))).... ( -22.81) >DroSec_CAF1 184745 92 - 1 AUAAAACAAUUAUACCCUUAUUAAGGGUAUUUAUGCCCGGGGAGUUGUGGGCUUUCCAAAUGCCUGGAUACAUCGCAUUUCAUUGCGACUCA ......((...(((((((.....)))))))...)).(((((.(....(((.....)))..).))))).....(((((......))))).... ( -25.90) >DroSim_CAF1 184919 92 - 1 AUAAAACAAUUAUACCCUUAUUAAGGGUAUUUAUGCCCGGGGAGUCGUGGGCUUUCCAAAUGCCUGGAUACAUCGCAUUUCAUUGCGACUCA ...........(((((((.....)))))))....(((((.(....).)))))..((((......))))....(((((......))))).... ( -26.50) >DroEre_CAF1 185162 69 - 1 -----------------------AGGGUAUUUAUGCCCGGGAAGUUAUGCGCUUUCCAAAUGCCUGGAUACAUUGCAUUUCAUUGCGACUCA -----------------------.(((((....)))))(((((((.....)))))))((((((.((....))..))))))............ ( -19.00) >DroYak_CAF1 194993 84 - 1 GCUAGACAAUUAGACCCUUAUUAAGGGUAUUUAUACC--------UAUUUACUUUCCAAAUGCUUGGAUACUUUGCAUUUCAUUGCGACUCA ..(((........(((((.....)))))........)--------)).......(((((....)))))....(((((......))))).... ( -14.59) >consensus AUAAAACAAUUAUACCCUUAUUAAGGGUAUUUAUGCCCGGGGAGUUGUGCGCUUUCCAAAUGCCUGGAUACAUUGCAUUUCAUUGCGACUCA ........................((((((((......(((((((.....))))))))))))))).......(((((......))))).... (-11.58 = -13.34 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:31 2006