Locus 3803

Sequence ID 3R_DroMel_CAF1
Location 10,326,872 – 10,326,973
Length 101
Max. P 0.665035
window6098

overview

Window 8

Location 10,326,872 – 10,326,973
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.69
Mean single sequence MFE -17.12
Consensus MFE -12.65
Energy contribution -12.52
Covariance contribution -0.14
Combinations/Pair 1.09
Mean z-score -1.24
Structure conservation index 0.74
SVM decision value 0.28
SVM RNA-class probability 0.665035
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10326872 101 - 27905053
AAGUACGCGCAGUUUCAACGCAUUGCGCAAC----AUAAUUGAAAUGAAAUGGAAUUGAAUUGAACAACAAC-------------GAGCAACAAUUUGCAA--AAUCGACAUUUAAAUAU
......(((((((........)))))))...----............(((((........(((.....)))(-------------((((((....))))..--..))).)))))...... ( -14.70)
>DroPse_CAF1 199973 111 - 1
AAGUACGCGCAAUUUCAACGCAUUGCGCAAC----AUAAUUGAAAUCGAAUUGAAU-----UGAACAACAACAACGGGCCACAACAGGCAACAAUUUGCAACAAAUCGACAUUUAAAUGU
......(((((((........))))))).((----((..(((((.((((.(((..(-----((.....)))......(((......)))............))).))))..))))))))) ( -20.50)
>DroWil_CAF1 206404 91 - 1
AACAACGCGCAAUUUAAACGCAUUGCGCAAC----AUAAUUGAAA-----UGGAAU-----UGAACAACAAC-------------AGGCAACAAUUUGCAA--AAUCGACAUUUAAAUGU
......(((((((........))))))).((----((.....(((-----((...(-----((.....))).-------------..((((....))))..--......)))))..)))) ( -14.70)
>DroMoj_CAF1 211598 90 - 1
AACUACGCGCAAUUUCAACGCAUUGCGCAACGAACAUAAUUGAA----------AU-----UGAACAACAAC-------------AGGCAACAAUUUGCAA--AAUCGACAUUUAAAUGC
......(((((((........)))))))..(((.((....))..----------..-----...........-------------..((((....))))..--..)))............ ( -14.10)
>DroAna_CAF1 162141 101 - 1
AAGUAAGCGCAAUUUCGACGCAUUGCGCAAC----AUAAUUGAAUCGAAAUGGAAUUAAGCUGAACAACAAC-------------GGGCAACAAUUUGCAA--AAUCGGCAUUUAAAUGU
......(((((((........))))))).((----((..((((.((......)).))))(((((....(((.-------------.(....)...)))...--..)))))......)))) ( -19.50)
>DroPer_CAF1 203559 111 - 1
AAGUACGCGCAAUUUCCACGCAUUGCGCAAC----AUAAUUGAAAUCGAAUGGAAU-----UGAACAACAACAACGGGCCACAACAGGCAACAAUUUGCAACAAAUCGACAUUUAAAUGU
......(((((((........))))))).((----((..(((((.((((.(((..(-----((........)))....)))......((((....))))......))))..))))))))) ( -19.20)
>consensus
AAGUACGCGCAAUUUCAACGCAUUGCGCAAC____AUAAUUGAAAU__AAUGGAAU_____UGAACAACAAC_____________AGGCAACAAUUUGCAA__AAUCGACAUUUAAAUGU
......(((((((........)))))))...........................................................((((....))))..................... (-12.65 = -12.52 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:30 2006