Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,322,536 – 10,322,633 |
Length | 97 |
Max. P | 0.815790 |
Location | 10,322,536 – 10,322,633 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 78.77 |
Mean single sequence MFE | -19.12 |
Consensus MFE | -12.47 |
Energy contribution | -12.30 |
Covariance contribution | -0.17 |
Combinations/Pair | 1.16 |
Mean z-score | -1.50 |
Structure conservation index | 0.65 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724621 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10322536 97 + 27905053 UGCCGUAUGCUGUUUUAUUUUUACCUUUAGAA-UGCAAUUGGAACUGUCAAUUUGCAUUUAAUUCGGCGAAAAUAAAUUGCCGCCUGACUCACGACUU ....((..((.((((((((((..((....(((-(((((((((.....)))).)))))))).....))..))))))))..)).))...))......... ( -19.30) >DroVir_CAF1 202485 74 + 1 -----------------------UUUUUAGAA-UGAAAUUGGAACUGUCAAUUUGCAUUUAAUUCGGCAAAAAUAAAUUGCCGACUGACUCACGACUU -----------------------......(((-(((((((((.....))))))).)))))...(((((((.......))))))).............. ( -15.70) >DroSim_CAF1 179470 92 + 1 UGCCGU-----GUUUUAUUUUUACCUUUAGAA-UGCAAUUGGAACUGUCAAUUUGCAUUUAAUUCGGCGAAAAUAAAUUGCCGCCUGACUCACGACUU ...(((-----(..(((............(((-(((((((((.....)))).))))))))....((((((.......))))))..)))..)))).... ( -20.70) >DroWil_CAF1 202074 92 + 1 CA---UUUGUU---UAUUUCGUUUUUUUAGAAUUGCAAUUGGAACUGUCAAUUUGCAUUUAAUUCGGCGAAAAUAAAUUGCCGACUGACUCACGACUU ..---......---....((((....((((...(((((((((.....)))).)))))......(((((((.......)))))))))))...))))... ( -18.60) >DroMoj_CAF1 206728 91 + 1 UG---UAUU-UCUUUUCUU--UUUUUUUAGAG-UGCAAUUGGAACUGUCAAUUUGCAUUUAAUUCGGCAAAAAUAAAUUGCCGAUUGACUCACGACUU ..---....-.........--........(((-(((((((((.....)))).)))).......(((((((.......)))))))...))))....... ( -18.40) >DroAna_CAF1 158564 91 + 1 CGCCGUUUUGUGUC------UCUCCCACAGAA-UGCAAUUGGAACUGUCAAUUUGCAUUUAAUUCGGCGAAAAUAAAUUGCCGCCUGACUCACGACCG ....(((.((.(((------.........(((-(((((((((.....)))).))))))))....((((((.......))))))...))).)).))).. ( -22.00) >consensus UG___U_U__UGUUUU_UU_UUUCCUUUAGAA_UGCAAUUGGAACUGUCAAUUUGCAUUUAAUUCGGCGAAAAUAAAUUGCCGACUGACUCACGACUU ..........................((((...(((((((((.....)))).))))).......((((((.......)))))).)))).......... (-12.47 = -12.30 + -0.17)
Location | 10,322,536 – 10,322,633 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 78.77 |
Mean single sequence MFE | -21.02 |
Consensus MFE | -10.77 |
Energy contribution | -10.93 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -2.25 |
Structure conservation index | 0.51 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10322536 97 - 27905053 AAGUCGUGAGUCAGGCGGCAAUUUAUUUUCGCCGAAUUAAAUGCAAAUUGACAGUUCCAAUUGCA-UUCUAAAGGUAAAAAUAAAACAGCAUACGGCA ..((((((.(((....)))..((((((((..((......(((((((.(((.......))))))))-)).....))..))))))))......)))))). ( -25.30) >DroVir_CAF1 202485 74 - 1 AAGUCGUGAGUCAGUCGGCAAUUUAUUUUUGCCGAAUUAAAUGCAAAUUGACAGUUCCAAUUUCA-UUCUAAAAA----------------------- ..(.(....).)..(((((((.......)))))))....((((.((((((.......))))))))-)).......----------------------- ( -16.50) >DroSim_CAF1 179470 92 - 1 AAGUCGUGAGUCAGGCGGCAAUUUAUUUUCGCCGAAUUAAAUGCAAAUUGACAGUUCCAAUUGCA-UUCUAAAGGUAAAAAUAAAAC-----ACGGCA ..((((((.(((....)))..((((((((..((......(((((((.(((.......))))))))-)).....))..)))))))).)-----))))). ( -27.40) >DroWil_CAF1 202074 92 - 1 AAGUCGUGAGUCAGUCGGCAAUUUAUUUUCGCCGAAUUAAAUGCAAAUUGACAGUUCCAAUUGCAAUUCUAAAAAAACGAAAUA---AACAAA---UG ...((((.......(((((...........)))))......(((((.(((.......))))))))...........))))....---......---.. ( -15.30) >DroMoj_CAF1 206728 91 - 1 AAGUCGUGAGUCAAUCGGCAAUUUAUUUUUGCCGAAUUAAAUGCAAAUUGACAGUUCCAAUUGCA-CUCUAAAAAAA--AAGAAAAGA-AAUA---CA .....(((..((..(((((((.......)))))))......(((((.(((.......))))))))-...........--.......))-..))---). ( -18.40) >DroAna_CAF1 158564 91 - 1 CGGUCGUGAGUCAGGCGGCAAUUUAUUUUCGCCGAAUUAAAUGCAAAUUGACAGUUCCAAUUGCA-UUCUGUGGGAGA------GACACAAAACGGCG ..(((((.......)))))..........(((((.....(((((((.(((.......))))))))-)).((((.....------..))))...))))) ( -23.20) >consensus AAGUCGUGAGUCAGGCGGCAAUUUAUUUUCGCCGAAUUAAAUGCAAAUUGACAGUUCCAAUUGCA_UUCUAAAAAAAA_AA_AAAACA__A_A___CA ..(.(....).)...((((...........)))).......(((((.(((.......))))))))................................. (-10.77 = -10.93 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:28 2006