| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,321,760 – 10,321,860 |
| Length | 100 |
| Max. P | 0.980976 |
| Location | 10,321,760 – 10,321,860 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 90.31 |
| Mean single sequence MFE | -24.95 |
| Consensus MFE | -20.54 |
| Energy contribution | -21.10 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.96 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.980976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10321760 100 - 27905053 CGUAAAUAACGCAGAAGAAAUACACUCGAACGUAUUUCUUUUGGCUGUUUUUGUAUUUUGUUUUGCAUUUUGCAUAGCGGCAUGAAUAAAUCUUCAAAUG ...........((((((((((((........))))))))))))((((((..((((...((.....))...)))).)))))).((((......)))).... ( -25.40) >DroSec_CAF1 178625 99 - 1 CGUAAAUAACGCAGAAGAAAUACACUCGAACGUAUUUCUUUUGGGC-UUUUUGUUUUUCAUUUUGCAUUUUGCAUAGCGGCAUGAAUAAAUCUUCAAACG (((......(.((((((((((((........)))))))))))).).-.........(((((.((((..........)))).)))))...........))) ( -20.20) >DroEre_CAF1 178858 90 - 1 CGUAAAUAACGCAGAAGAAAUACACUCGAACGUAUUUCUUUUG--C-U-------UUUUGUUGUGCAUUUUGCAUAGCGGCAUGAAUAAAUCUUCAAACG .((.......(((((((((((((........))))))))))))--)-.-------...((((((((.....)))))))))).((((......)))).... ( -27.10) >DroYak_CAF1 188599 90 - 1 CGUAAAUAACGCAGAAGAAAUACACUCGAACGUAUUUCUUUUG--C-U-------UUUUGUUGUGCAUUUUGCAUAGCGGCAUGAAUAAAUCUUCAAACG .((.......(((((((((((((........))))))))))))--)-.-------...((((((((.....)))))))))).((((......)))).... ( -27.10) >consensus CGUAAAUAACGCAGAAGAAAUACACUCGAACGUAUUUCUUUUG__C_U_______UUUUGUUGUGCAUUUUGCAUAGCGGCAUGAAUAAAUCUUCAAACG .((........((((((((((((........))))))))))))...............((((((((.....)))))))))).((((......)))).... (-20.54 = -21.10 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:26 2006