Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,451,857 – 1,452,010 |
Length | 153 |
Max. P | 0.993685 |
Location | 1,451,857 – 1,451,970 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.37 |
Mean single sequence MFE | -19.45 |
Consensus MFE | -13.24 |
Energy contribution | -13.00 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.21 |
Mean z-score | -1.22 |
Structure conservation index | 0.68 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1451857 113 - 27905053 AGACAGCUAAAACAUAGGUAUCAGUGUUCCAACUCGCUGAUAUUACGAAAGCUACUUUAGAUAUGU-AGUUGUAUUUUAUCGCUACAAUUUU-CCC-----UAAUAAAGAUCAAAUUCCU ..((((((...(((((((((((((((........)))))))))).(....)..........)))))-))))))...................-...-----................... ( -20.30) >DroSec_CAF1 24423 110 - 1 AGAAAGCUUAAACAUAGAUAUCAGUGUUCUAAGUCACUGAUAUUACGAAAGCUUUUUUAGAUAUC-----UGCCUAGCAUCACUACAAUUUAACCU-----UAAUAAAGAUCAAUUUCCU (((((((((.......((((((((((........))))))))))....)))))))))..(((...-----(((...)))...............((-----(....))))))........ ( -18.60) >DroSim_CAF1 22731 110 - 1 AGAAAGCUUAAACAUAGGUAUCAGUGUUCUAAGUCGCUGGUAUUACGAAAGCUUUUUUAGAUAUC-----UGCCUAGCAUCACUACAAUUUAACCU-----UAAUAAAGACCAAUUUCCU ...(((.(((((..((((((((((((........))))))))).......(((....(((....)-----))...)))....)))...))))).))-----).................. ( -16.50) >DroEre_CAF1 26012 119 - 1 AUAAAGCUAAAACAUAGGUAUCAGUGUCAGAACUCGCUGAUAUUGUGAAAGCUAUUUUAGAUAUUGCUC-UUACAAUCAUUUGUACAUCAGUACCUUACAAUAAUAAAGGCCAGUUUCCU ....((((...(((...(((((((((........))))))))))))...))))......((.((((..(-((..........((((....))))............)))..)))).)).. ( -22.15) >DroYak_CAF1 24445 108 - 1 ACAAAGCUAAAACAUAGAUAUCAGUGUUCAAAAUCGCUGAUACUGAAAAAGCUAUUUUA------GCUC-UUACAAUUAUUUGUAGCGUU-GACCUUA----AAUAAAGAUAAAUUUCAU .(((.((((.....(((.((((((((........)))))))))))....(((((...))------))).-.............)))).))-)......----.................. ( -19.70) >consensus AGAAAGCUAAAACAUAGGUAUCAGUGUUCUAACUCGCUGAUAUUACGAAAGCUAUUUUAGAUAUC_____UGACUAUCAUCACUACAAUUUAACCU_____UAAUAAAGAUCAAUUUCCU ....((((........((((((((((........)))))))))).....))))................................................................... (-13.24 = -13.00 + -0.24)
Location | 1,451,891 – 1,452,010 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.37 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -16.86 |
Energy contribution | -17.02 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.29 |
Mean z-score | -2.67 |
Structure conservation index | 0.62 |
SVM decision value | 2.42 |
SVM RNA-class probability | 0.993685 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1451891 119 - 27905053 CAGCUAUGAUGACAUACUAAAUCUUUCGAAUGAUCUGGAAAGACAGCUAAAACAUAGGUAUCAGUGUUCCAACUCGCUGAUAUUACGAAAGCUACUUUAGAUAUGU-AGUUGUAUUUUAU ....((..((.((((((((((.((((((..((.(((....)))))...........((((((((((........)))))))))).))))))....))))).)))))-.))..))...... ( -29.80) >DroSec_CAF1 24458 115 - 1 CAAUAAUGAUGACAUACUAGAUCUUUUGAAUGAUCUGGAAAGAAAGCUUAAACAUAGAUAUCAGUGUUCUAAGUCACUGAUAUUACGAAAGCUUUUUUAGAUAUC-----UGCCUAGCAU .......((((.(...(((((((........))))))).((((((((((.......((((((((((........))))))))))....)))))))))).).))))-----.......... ( -30.70) >DroSim_CAF1 22766 115 - 1 CAAUAAUGAUGACAUACUAGAUCUUUUGAAUGAUCUGGAAAGAAAGCUUAAACAUAGGUAUCAGUGUUCUAAGUCGCUGGUAUUACGAAAGCUUUUUUAGAUAUC-----UGCCUAGCAU .......((((.(...(((((((........))))))).((((((((((.......((((((((((........))))))))))....)))))))))).).))))-----.......... ( -29.20) >DroEre_CAF1 26052 119 - 1 AAAUAAUGAAGACAUAGCAAACCUUUUGAAUGAUUUGGAAAUAAAGCUAAAACAUAGGUAUCAGUGUCAGAACUCGCUGAUAUUGUGAAAGCUAUUUUAGAUAUUGCUC-UUACAAUCAU .....((((...........((((.....(((.(((((........))))).)))))))(((((((........))))))).((((((.(((.............))).-)))))))))) ( -21.62) >DroYak_CAF1 24480 113 - 1 AAACAAUGAUGACAUAUUAAAUCUAUUGAAUAAUUGGGAAACAAAGCUAAAACAUAGAUAUCAGUGUUCAAAAUCGCUGAUACUGAAAAAGCUAUUUUA------GCUC-UUACAAUUAU ...(((((((..........))).)))).((((((((....)..(((((((..((((.((((((((........))))))))((.....))))))))))------))).-...))))))) ( -24.20) >consensus CAAUAAUGAUGACAUACUAAAUCUUUUGAAUGAUCUGGAAAGAAAGCUAAAACAUAGGUAUCAGUGUUCUAACUCGCUGAUAUUACGAAAGCUAUUUUAGAUAUC_____UGACUAUCAU ................(((((((........)))))))......((((........((((((((((........)))))))))).....))))........................... (-16.86 = -17.02 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:52 2006