Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 295,520 – 295,617 |
Length | 97 |
Max. P | 0.986351 |
Location | 295,520 – 295,617 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 94.25 |
Mean single sequence MFE | -31.58 |
Consensus MFE | -28.36 |
Energy contribution | -29.40 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.76 |
Structure conservation index | 0.90 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 295520 97 - 27905053 AAAGCGUGCCACUGACACACAGAGCGAACUACGAGCACC-ACUCACCGGUUGCGACAGCACCGAAUUUCACGCUGGCUGAGGCAAUGGCAGCGACCAC ...((.(((((.((...(.(((((((......(((....-.)))..((((.((....)))))).......))))..))).).)).)))))))...... ( -29.40) >DroSec_CAF1 30867 97 - 1 AAAGCGUGCCACUGACCCACACAGCGAACUACGAGCACC-ACUCACCGGUUGCGACAGCAGCGAAUUUCACGCUGGCUGAGGCAAUGGCAGCGACCAU ...((.(((((.((.((((..(((((......(((....-.)))....(((((....)))))........)))))..)).)))).)))))))...... ( -34.50) >DroSim_CAF1 32578 97 - 1 AAAGCGUGCCACUGACCCACACAGCGAACUACGAGCACC-ACUCACCGGUUGCGACAGCAGCGAAUUUCACGCUGGCUGAGGCAAUGGCAGCGACCAU ...((.(((((.((.((((..(((((......(((....-.)))....(((((....)))))........)))))..)).)))).)))))))...... ( -34.50) >DroEre_CAF1 33222 97 - 1 AAAGCGUGCCACUGACCCACACAGCGAACUACGAACAUC-ACUCACCGGUUGCGACAGCAGCGAAUUUCACGCUGACUGAGGUAACGGCAGCGACAAU ...((.((((....(((((..(((((......((.....-..))....(((((....)))))........)))))..)).)))...))))))...... ( -27.70) >DroYak_CAF1 35088 98 - 1 AAAGCGUGCCACUGACCCACACAGCGAACUACGAACGCCAACUCACCGGUUGCGACAGCAGCGAAUUUCACGCUGGCUGAGGCAAUGGCAGCGGCAAU ...((.(((((.((.((((..(((((......((........))....(((((....)))))........)))))..)).)))).)))))))...... ( -31.80) >consensus AAAGCGUGCCACUGACCCACACAGCGAACUACGAGCACC_ACUCACCGGUUGCGACAGCAGCGAAUUUCACGCUGGCUGAGGCAAUGGCAGCGACCAU ...((.(((((.((.((((..(((((......(((......)))....(((((....)))))........)))))..)).)))).)))))))...... (-28.36 = -29.40 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:02 2006