Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,318,513 – 10,318,620 |
Length | 107 |
Max. P | 0.697692 |
Location | 10,318,513 – 10,318,620 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 93.66 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -27.38 |
Energy contribution | -27.26 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.37 |
Structure conservation index | 0.85 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697692 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10318513 107 + 27905053 --UAGUCUUCUUUUUUUCUCUGUGCACCAGGGGUUGGGCAAUCGAGUUCAAUUUAAAAUAAAUGAGUUGUGCGCGUGCAAUUCCGAGUGCAGAAGUUGGCAGUCAUCAU --..(((..((((.........(((((..(((((((.((...((....(((((((.......)))))))..)).)).)))))))..)))))))))..)))......... ( -26.80) >DroSec_CAF1 175376 106 + 1 --CAGUCUUCUUUU-UUUUAUGUGCACCAGGGGUUGGGCAAUCGAGUUCAAUUUAAAAUAAAUGAGUUGUGCGCGUGCAAUUCCGAGUGCAGAAGUUGGCAGUCAUCAU --..(((..((((.-.......(((((..(((((((.((...((....(((((((.......)))))))..)).)).)))))))..)))))))))..)))......... ( -26.90) >DroSim_CAF1 175859 106 + 1 --GAGGCUUCUUUU-UUCUCUGUGCACCAGGGGUUGGGCAAUCGAGUUCAAUUUAAAAUAAAUGAGUUGUGCGCGUGCAAUUCCGAGUGCAGAAGUUGGCAGUCAUCAU --((((((.((..(-((((....((((..(((((((.((...((....(((((((.......)))))))..)).)).)))))))..)))))))))..)).)))).)).. ( -31.50) >DroEre_CAF1 175564 106 + 1 --UGGCCCCCUUUU-UUCUCGGUGCACCAGGGGUUGGGCAAUCGAGUUCAAUUUAAAAUAAAUGAGUUGUGCGCGUGCAAUUCCGAGUGCAGAAGUUGGCAGCCAUCAU --((((..((...(-((((....((((..(((((((.((...((....(((((((.......)))))))..)).)).)))))))..)))))))))..))..)))).... ( -32.40) >DroYak_CAF1 185206 108 + 1 GAUGGCCUGCUUUU-UUCUCGGUGCACCAGGGGUUGGGCAAUCGAGCUCAAUUUAAAAUAAAUGAGUUGUGCGCGUGCAAUUCCGAGUGCAGAAGUUGGCAGCCAUCAU ((((((.((((..(-((((....((((..(((((((.((......((.(((((((.......))))))).))..)).)))))))..)))))))))..)))))))))).. ( -43.90) >consensus __UAGCCUUCUUUU_UUCUCUGUGCACCAGGGGUUGGGCAAUCGAGUUCAAUUUAAAAUAAAUGAGUUGUGCGCGUGCAAUUCCGAGUGCAGAAGUUGGCAGUCAUCAU ....(((..((((.........(((((..(((((((.((......((.(((((((.......))))))).))..)).)))))))..)))))))))..)))......... (-27.38 = -27.26 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:25 2006