Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,318,274 – 10,318,377 |
Length | 103 |
Max. P | 0.853067 |
Location | 10,318,274 – 10,318,377 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 80.49 |
Mean single sequence MFE | -29.69 |
Consensus MFE | -25.08 |
Energy contribution | -24.84 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.72 |
Structure conservation index | 0.84 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10318274 103 + 27905053 GACGCUCGCGGCUUAGUUACACUUUGUUACUUUGUUGUGGGCGCGUGCAGACAAUCAGGUGCACUUCAAAAAAAUGUUGAUAGCUUAG-AGAAAAA-CUGGAU----------AU (.((((((((((..(((.((.....)).)))..)))))))))))((.(((....((((((.....((((.......))))..)))).)-)......-))).))----------.. ( -26.00) >DroSec_CAF1 175119 114 + 1 GACGCUCGCGGCUUAGUUACACUUUGUUACUUUGUUGUGGGCGCGUGCAGACAAUCAGGUGCACUUCAAAAAAAUUUAGAUAGCUUAC-AGAAAAAAAUGGGUUUUAUAGAAUAU (.((((((((((..(((.((.....)).)))..)))))))))))(((((..(.....).)))))..........((((...((((((.-.........))))))...)))).... ( -27.70) >DroSim_CAF1 175609 113 + 1 GACGCUCGCGGCUUAGUUACACUUUGUUACUUUGUUGUGGGCGCGUGCAGACAAUCAGGUGCACUUCAAAAAAAUGUAGAUAGCUUGG-AGAAAAA-CUUGAUUUUAUAGAAUAU (.((((((((((..(((.((.....)).)))..)))))))))))........((((((((...((((((...............))))-))....)-)))))))........... ( -30.06) >DroEre_CAF1 175282 103 + 1 GACGCUCGCAGCUAAGUUACACUUUGUUACUUGGUUGUGGGCGCGUGCAGACAAUCAGGUGCACUUGAAA-AAACGUAGGCGGCUUAGCAGGAAAC-CUGGAA----------AU (.(((((((((((((((.((.....)).))))))))))))))))..........((((((...((((..(-(..((....))..))..))))..))-))))..----------.. ( -38.60) >DroYak_CAF1 184994 85 + 1 GACGCUCGCAGCUAAGUUACACUUUGUUACUUUGUUGUGGGCGCGUGCAGACAAUCAGGUGCACUUCAAA-AAAUGUAAGUAGCUU----------------------------- (.((((((((((.((((.((.....)).)))).)))))))))))(((((..(.....).)))))......-...............----------------------------- ( -26.10) >consensus GACGCUCGCGGCUUAGUUACACUUUGUUACUUUGUUGUGGGCGCGUGCAGACAAUCAGGUGCACUUCAAAAAAAUGUAGAUAGCUUAG_AGAAAAA_CUGGAU__________AU (.((((((((((..(((.((.....)).)))..)))))))))))(((((..(.....).)))))................................................... (-25.08 = -24.84 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:24 2006