Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,316,084 – 10,316,193 |
Length | 109 |
Max. P | 0.958728 |
Location | 10,316,084 – 10,316,193 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.96 |
Mean single sequence MFE | -34.94 |
Consensus MFE | -23.32 |
Energy contribution | -23.35 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -3.36 |
Structure conservation index | 0.67 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10316084 109 - 27905053 CCCCAAGCCCCGACU-GUGGCGCAAAUUUGAUCCAAUUGUGCACUCAUUUAAUCGUGAUCUUUAUGCGAGUGUACAGUUGGAUGUGUUUAGCCUUUUAUGUCGUCCAUCG---------- ..........((((.-..(((..((((...((((((((((((((((...(((.........)))...))))))))))))))))..)))).)))......)))).......---------- ( -34.20) >DroPse_CAF1 188616 111 - 1 -----G-AGCCGACUCUUGGCGCAAAUUUGAUCCAAUUGUGCACUCAUUUAAUCGUGAUCUUUAUGCGACUGUACAGUUGGAUGUGUUUAGCCUUUUAUG---UCGGGCUCAGUCGAGAG -----(-(((((((....(((..((((...(((((((((((((.((...(((.........)))...)).)))))))))))))..)))).)))......)---)).)))))......... ( -36.80) >DroEre_CAF1 172700 91 - 1 ----------------GUGGCGCAAAUUUGAUCCAAUUGUGCACUCACUUAAUCGUGAUCUUUAUGCGAGUGUACAGUUGGAUGUGUUUAGCCUUUUAUG---UCCAUCG---------- ----------------..(((..((((...((((((((((((((((.(.(((.........))).).))))))))))))))))..)))).))).......---.......---------- ( -31.30) >DroWil_CAF1 193806 106 - 1 -----G-ACUUGGCUUUUGGUGCAAAUUUGAUCCAAUUGUGCAUUCAUUUAAUCGUGAUCUUUAUGAGACUGUACAGUUGGAUGUGUUUAGCCUUUUAUG---UCGAGUCCA-----CAU -----(-(((((((....(((..((((...(((((((((((((.((......((((((...)))))))).)))))))))))))..)))).)))......)---)))))))..-----... ( -34.80) >DroAna_CAF1 153184 98 - 1 --------UGCGGCU-UUGGCGCAAAUUUGAUCCAAUUGUGCACUCAUUUAAUCGUGAUCUUUAUGCGAGUGUACAGUUGGAUGUGCUUAGCCUUUUGUG---UCCAUCG---------- --------...((((-..((((((.......(((((((((((((((...(((.........)))...))))))))))))))))))))).)))).......---.......---------- ( -35.71) >DroPer_CAF1 192023 111 - 1 -----G-AGCCGACUCUUGGCGCAAAUUUGAUCCAAUUGUGCACUCAUUUAAUCGUGAUCUUUAUGCGACUGUACAGUUGGAUGUGUUUAGCCUUUUAUG---UCGGGCUCAGUCGAGAG -----(-(((((((....(((..((((...(((((((((((((.((...(((.........)))...)).)))))))))))))..)))).)))......)---)).)))))......... ( -36.80) >consensus _____G_ACCCGACU_UUGGCGCAAAUUUGAUCCAAUUGUGCACUCAUUUAAUCGUGAUCUUUAUGCGACUGUACAGUUGGAUGUGUUUAGCCUUUUAUG___UCCAGCG__________ ..................(((..((((...(((((((((((((.((...(((.........)))...)).)))))))))))))..)))).)))........................... (-23.32 = -23.35 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:23 2006