Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,310,416 – 10,310,519 |
Length | 103 |
Max. P | 0.852212 |
Location | 10,310,416 – 10,310,519 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.16 |
Mean single sequence MFE | -32.87 |
Consensus MFE | -22.34 |
Energy contribution | -22.40 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.19 |
Mean z-score | -1.60 |
Structure conservation index | 0.68 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852212 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10310416 103 - 27905053 CCGGCUCUGGGGUCCCCGCUUCCCGGUCAAAACAAACAGCACUUAAAAUGUGU-------------UUUCUUGUUUGCCCGCCAUGUAACAAGUGGCUGGCAGGCGGAAGUGAACU ..((((....))))..(((((((..(((.((((((..(((((.......))))-------------)...))))))(((.(((((.......))))).))).)))))))))).... ( -36.20) >DroPse_CAF1 182942 110 - 1 ------CCUCUCUCCCUCUCUUUGGGCCAAAACAAACAGCACUUAAAAUGUGUAUUCGUGUGUGUGUUUCUUGUUUGCCUGCAAAGUAACAAGUGGCUGGCAGGCGGAAGUGGACU ------((.((..(((.......)))((.((((((..(((((.....(((......)))....)))))..))))))((((((..(((........))).)))))))).)).))... ( -29.80) >DroEre_CAF1 167065 103 - 1 UAGACCCCGCUCUCCCCGCUUCCCGGUCAAAACAAACAGCACUUAAAAUGUGU-------------UUUCUUGUUUGCCCGCCAUGUAACAAGUGGCUGGCAGGCGGAAGUGAACU ................(((((((..(((.((((((..(((((.......))))-------------)...))))))(((.(((((.......))))).))).)))))))))).... ( -32.90) >DroYak_CAF1 177060 103 - 1 UCGACGCUGGUCUCCCCGCUCCGCGGUCAAAACAAACAGCACUUAAAAUGUGU-------------UUUCUUGUUUGCCCGCCAUGUAACAAGUGGCUGGCAGGCGGAAGUGAACU ..(((....)))....((((((((.....((((((..(((((.......))))-------------)...))))))(((.(((((.......))))).)))..)))).)))).... ( -34.70) >DroAna_CAF1 148765 93 - 1 ---------GUUUUCUGACUUCCCGGUCAAAACAAACAGCACUUA-AAUGAGU-------------UUUCUUGUUUGCCCGCCAUGUAACACGUGGCUGGCAGGCGGAAGUGGAAU ---------...((((.((((((.................((((.-...))))-------------......(((((((.((((((.....)))))).))))))))))))))))). ( -32.30) >DroPer_CAF1 186216 110 - 1 ------CCUCUCUCCCUCUCUUUGGGCCAAAACAAACAGCACUUAAAAUGUGUAUGCGUGUGUGUGUUUCUUGUUUGCCUGCAAAGUAACAAGUGGCUGGCAGGCGGAAGUGGACU ------((.((..(((.......)))((.((((((..(((((.....((((....))))....)))))..))))))((((((..(((........))).)))))))).)).))... ( -31.30) >consensus ______CCGCUCUCCCCGCUUCCCGGUCAAAACAAACAGCACUUAAAAUGUGU_____________UUUCUUGUUUGCCCGCCAUGUAACAAGUGGCUGGCAGGCGGAAGUGAACU ...............(((.....)))(((.........((((.......)))).............(((((.(((((((.(((((.......))))).)))))))))))))))... (-22.34 = -22.40 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:21 2006