Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,302,560 – 10,302,662 |
Length | 102 |
Max. P | 0.684007 |
Location | 10,302,560 – 10,302,662 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 81.97 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -16.79 |
Energy contribution | -17.27 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.08 |
Mean z-score | -2.07 |
Structure conservation index | 0.63 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10302560 102 - 27905053 UA----------GAAAAAAGCG--UCGGAAAAAACUGUCUUAAUGAUAGACAUUCACUUUUUAUGGC-CGCG-CGAGGUGUGUGUCUUAAUGGAGUGAAAUUUCUGGUAAUUGAGC ..----------..........--(((((((...(((((.....)))))...(((((((((((.(((-((((-(...))))).))).))).)))))))).)))))))......... ( -26.00) >DroPse_CAF1 170200 103 - 1 AA----------AAAACAAGAG--CUAGUGAAAAAUUUCUUAAUGAUAGACAUUCACUUUUUAUGGA-CACGCCGAGGUGUGUGUCUUAAUGGAGUGAAAUUUCUGGUAAUUGAGC ..----------....(((..(--((((.((......(((.......)))..((((((((....(((-(((((......))))))))....)))))))).)).)))))..)))... ( -26.70) >DroWil_CAF1 179062 92 - 1 CA----------GUAAC-AGC------------ACUCGGCAAAUGAUAGACAUUCACUUUUUAUGGAACGCG-CGAGGUGUGUGUAUUAAUGGAGUGAAAUUUCUGGUAAUUGAGC ((----------((.((-.((------------.....))......((((..((((((((...(((.(((((-(.....)))))).)))..))))))))...)))))).))))... ( -20.10) >DroYak_CAF1 168947 112 - 1 UAUAAAAACGUAGAAAAAAGCG--UUGGAAAAAAUUGUCUUAAUGAUAGACAUUCACUUUUUAUGGA-CGCG-CGAGGUGUGUGUCUUAAUGGAGUGAAAUUUCUGGUAAUUGAGC ......(((((........)))--))(((((....(((((.......)))))((((((((....(((-((((-(.....))))))))....)))))))).)))))........... ( -29.90) >DroAna_CAF1 142149 101 - 1 -------------GAAAAAGCGCCAUGGAACCAAUUGUCUUAAUGAUAGACAUUCACUUUUUAUGGA-CGCG-CGAGGUGUGUGUCUUAAUGGAGUGAAAUUUCUGGUAAUUGAGC -------------........((((.((((.....(((((.......)))))((((((((....(((-((((-(.....))))))))....)))))))).))))))))........ ( -29.90) >DroPer_CAF1 173239 102 - 1 -A----------AAAACAAGAG--CCAGUGAAAAAUUUCUUAAUGAUAGACAUUCACUUUUUAUGGA-CACGCCGAGGUGUGUGUCUUAAUGGAGUGAAAUUUCUAGUAAUUGAGC -.----------..........--..............((((((..((((..((((((((....(((-(((((......))))))))....))))))))...))))...)))))). ( -27.00) >consensus _A__________GAAAAAAGCG__CUGGAAAAAAAUGUCUUAAUGAUAGACAUUCACUUUUUAUGGA_CGCG_CGAGGUGUGUGUCUUAAUGGAGUGAAAUUUCUGGUAAUUGAGC ......................................((((((..((((..((((((((....(((.((((........)))))))....))))))))...))))...)))))). (-16.79 = -17.27 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:19 2006