Locus 3792

Sequence ID 3R_DroMel_CAF1
Location 10,293,227 – 10,293,326
Length 99
Max. P 0.866994
window6086

overview

Window 6

Location 10,293,227 – 10,293,326
Length 99
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 81.51
Mean single sequence MFE -22.44
Consensus MFE -14.41
Energy contribution -14.37
Covariance contribution -0.04
Combinations/Pair 1.17
Mean z-score -2.14
Structure conservation index 0.64
SVM decision value 0.85
SVM RNA-class probability 0.866994
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10293227 99 - 27905053
UAUCAACAUAUUCAAGUACUUCAUUAUCUUUGCCGGGGUAGAAAUAAACA--------------GCAUAGCAAAAAUAUUUCUCCCUGUACAUGCAUUGCAUGUGGCAUGAAA
..........................((..((((((((.(((((((....--------------((...)).....)))))))))))..((((((...)))))))))).)).. ( -23.10)
>DroSec_CAF1 150445 97 - 1
UAUUGACAUAUUCAAGCACUUCUAAUUCGUUGCCAAGGUAGAAAUAAACA--------------ACAUAGCAA--AUAUUUCUUCAUGUACAUGCAUUGCAUGUGGCAUGAAA
..((((.....))))..........(((((.(((..((.(((((((....--------------.........--.)))))))))....((((((...)))))))))))))). ( -18.04)
>DroSim_CAF1 150059 97 - 1
UAUUGACAUAUUCAAGCACUUCUAAUUCGUUGCCAAGGUAGAAAUAAACA--------------ACAUAGCAA--AUAUUUCUCCCUGUACAUGCAUUGCAUGUGGCAUGAAA
..((((.....))))..........(((((.(((.(((.(((((((....--------------.........--.))))))).)))..((((((...)))))))))))))). ( -21.94)
>DroEre_CAF1 150452 110 - 1
CAUCGACAGAUUCGAGCACUUCAUUAUCGUUACCAAGGUAAAAAUA-ACAACUUCGCCUUGGAAACGUAGCAA--AUAUUUCUCCCUGUACAUGCAUUGCAUGUGGCAUGAAA
..((((.....))))((..........((((.((((((..((....-.....))..)))))).))))......--.............(((((((...)))))))))...... ( -24.80)
>DroYak_CAF1 159424 111 - 1
UAUCGACAUAUUCAAGCACUGCAUUAUCGUUAGCAAGGUAAAAAUAAACAACUUCGCCUUGAAAACAUAGCAA--AUAUUUCUCCCUGUAUAUGCAUUGCAUGUGGCAUGAAA
..........((((.((((((((.....(((..(((((..((..........))..)))))..)))...(((.--((((........)))).)))..)))).)).)).)))). ( -24.30)
>consensus
UAUCGACAUAUUCAAGCACUUCAUUAUCGUUGCCAAGGUAGAAAUAAACA______________ACAUAGCAA__AUAUUUCUCCCUGUACAUGCAUUGCAUGUGGCAUGAAA
..........((((.((..................(((.(((((((..............................))))))).))).(((((((...))))))))).)))). (-14.41 = -14.37 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:18 2006