| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,278,048 – 10,278,143 |
| Length | 95 |
| Max. P | 0.920431 |
| Location | 10,278,048 – 10,278,143 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.89 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -15.33 |
| Energy contribution | -15.90 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.920431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10278048 95 + 27905053 GAGCAAAUCGAUAAUGCAAUGUGGCAUAUAUUA--------UAAGAUGAAGAUGCAGGGGAAACAAAUGUUAUAUUCGUCGAUUUGUACUAGUUAAUAGGUAU-- ..(((((((((((((((......)))).)))).--------...((((((...(((..(....)...)))....))))))))))))).(((.....)))....-- ( -24.10) >DroSec_CAF1 135521 103 + 1 GAGCAAAUCGAUAAUGCAAUGCGGCAUAUAUUAGCGGGUGAUGAGUUGAAGAUGCGGAGGAAACAAAUGUUAUAUUCGACGAUUUGUACUAGUUAAAAGGUAC-- ..(((((((((((((((......)))).))))............((((((...(((..(....)...)))....)))))))))))))................-- ( -21.30) >DroSim_CAF1 134734 103 + 1 GAGCAAAUCGAUAAUGCAAUGCGGCAUAUAUUAGCGGGUGAUGAGUUGAAGAUGGGGAGGAAACAAAUGUUAUAUUCGACGAUUUGUACUAGUUAAAAGGUAC-- ..(((((((((((((((......)))).))))............((((((.((((.(.(....)...).)))).)))))))))))))................-- ( -19.50) >DroEre_CAF1 135908 89 + 1 GGGCAAAUCGAUAAUGCAAUGCGGCAUAAAUUAGCGGGCGAUGAGAUGAAGAUGCA----------------UGCUGGUCGAUUUGUAGUAGUUAAAAGGUACCA ..((((((((((...(((.((((.(((...(((........))).)))....))))----------------)))..)))))))))).................. ( -22.50) >DroYak_CAF1 143659 91 + 1 GAGCAAAUCGAUAAUGCAAUGCGGCAUAAAUUAGCGGGCGAUGCGAUGAGGAUGCACAGGAAACAUAUGCGAUAUUGGUCGAUUUGUAGU--------------A ..((((((((((..((((.(((.((........))..))).)))).......((((..(....)...))))......))))))))))...--------------. ( -24.60) >consensus GAGCAAAUCGAUAAUGCAAUGCGGCAUAUAUUAGCGGGCGAUGAGAUGAAGAUGCAGAGGAAACAAAUGUUAUAUUCGUCGAUUUGUACUAGUUAAAAGGUAC__ ..(((((((....((((......)))).................((((((...(((..(....)...)))....))))))))))))).................. (-15.33 = -15.90 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:13 2006