Locus 3788

Sequence ID 3R_DroMel_CAF1
Location 10,272,042 – 10,272,135
Length 93
Max. P 0.589964
window6079

overview

Window 9

Location 10,272,042 – 10,272,135
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 83.14
Mean single sequence MFE -20.68
Consensus MFE -16.51
Energy contribution -16.57
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.51
Structure conservation index 0.80
SVM decision value 0.11
SVM RNA-class probability 0.589964
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10272042 93 - 27905053
CAACACGAGUGUUUUUUUUUUGUGGUGGUUGUUGUUGUUGUUGUUGGGCUACUGUCUGUUGCAUGCAAAUGCAAAAUGAUUGAUGUUGCCACA
...((((((.........))))))(((((.......((..((...((((....)))).((((((....))))))))..)).......))))). ( -22.54)
>DroSec_CAF1 129560 70 - 1
CAACGCGAGUGUU--------------------GU---UGUUGUUGGGCUACUGUCUGUUGCAUGCAAAUGCAAAAUGAUUGAUGUUGCCACA
((((((((.....--------------------.)---)).)))))(((.((.(((..((((((....))))))...)))....)).)))... ( -19.00)
>DroSim_CAF1 128708 73 - 1
CAACACGAGUGUU--------------------GUUUUUGUUGUUGGGCUACUGUCUGUUGCAUGCAAAUGCAAAAUGAUUGAUGUUGCCACA
(((((((((....--------------------...)))).)))))(((.((.(((..((((((....))))))...)))....)).)))... ( -20.40)
>DroYak_CAF1 137318 79 - 1
CAACACGAGGGUU--------------GUUGUUUUUGUUGUUGUUGGGCUACUGUCUGUUGCAUGCAAAUGCAAAAUGAUUGAUGUUGCCACA
(((((((((..(.--------------...)..)))).)))))...(((.((.(((..((((((....))))))...)))....)).)))... ( -20.80)
>consensus
CAACACGAGUGUU____________________GUUGUUGUUGUUGGGCUACUGUCUGUUGCAUGCAAAUGCAAAAUGAUUGAUGUUGCCACA
((((((((.............................))).)))))(((.((.(((..((((((....))))))...)))....)).)))... (-16.51 = -16.57 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:12 2006