Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,267,131 – 10,267,224 |
Length | 93 |
Max. P | 0.994879 |
Location | 10,267,131 – 10,267,224 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 81.40 |
Mean single sequence MFE | -18.52 |
Consensus MFE | -14.02 |
Energy contribution | -14.02 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.13 |
Structure conservation index | 0.76 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10267131 93 + 27905053 AUGAUAUUCCAAGUGGUUGGCGGCGGCACCACCACCAUCCUGCCCCAUUCUGCACCACUCUGCACCACUUCUGUACAACUUCUACACCACCUC .((.(((...((((((((((.(((((.............))))))))....(((......))))))))))..)))))................ ( -20.22) >DroSec_CAF1 124716 72 + 1 AUGAUAUUCCAAGUGGUUGGCGGCGGCACCACCACCAUCCUGCCCCACUCUGCACCAC---------------------UUCUGCACCACCUC ............((((((((.(((((.............))))))))....(((....---------------------...))))))))... ( -16.82) >DroSim_CAF1 123859 72 + 1 AUGAUAUUCCAAGUGGUUGGCGGCGGCACCACCACCAUCCUGCCCCACUCUGCACCAC---------------------UUCGGCACCACCUC ........((((((((((((.(((((.............))))))))......)))))---------------------)).))......... ( -18.52) >consensus AUGAUAUUCCAAGUGGUUGGCGGCGGCACCACCACCAUCCUGCCCCACUCUGCACCAC_____________________UUCUGCACCACCUC ............((((((((.(((((.............))))))))......)))))................................... (-14.02 = -14.02 + -0.00)
Location | 10,267,131 – 10,267,224 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 81.40 |
Mean single sequence MFE | -30.43 |
Consensus MFE | -25.20 |
Energy contribution | -25.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.99 |
Structure conservation index | 0.83 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994879 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10267131 93 - 27905053 GAGGUGGUGUAGAAGUUGUACAGAAGUGGUGCAGAGUGGUGCAGAAUGGGGCAGGAUGGUGGUGGUGCCGCCGCCAACCACUUGGAAUAUCAU ...(((((((......(((((.......)))))(((((((((........))....((((((((....)))))))))))))))...))))))) ( -33.30) >DroSec_CAF1 124716 72 - 1 GAGGUGGUGCAGAA---------------------GUGGUGCAGAGUGGGGCAGGAUGGUGGUGGUGCCGCCGCCAACCACUUGGAAUAUCAU ..((((...(..((---------------------(((((((........))....((((((((....))))))))))))))).)..)))).. ( -27.40) >DroSim_CAF1 123859 72 - 1 GAGGUGGUGCCGAA---------------------GUGGUGCAGAGUGGGGCAGGAUGGUGGUGGUGCCGCCGCCAACCACUUGGAAUAUCAU ..((((...((.((---------------------(((((((........))....((((((((....)))))))))))))))))..)))).. ( -30.60) >consensus GAGGUGGUGCAGAA_____________________GUGGUGCAGAGUGGGGCAGGAUGGUGGUGGUGCCGCCGCCAACCACUUGGAAUAUCAU .(((((((...............................(((........)))...((((((((....))))))))))))))).......... (-25.20 = -25.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:08 2006