Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,256,099 – 10,256,204 |
Length | 105 |
Max. P | 0.716595 |
Location | 10,256,099 – 10,256,204 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 68.30 |
Mean single sequence MFE | -30.47 |
Consensus MFE | -16.66 |
Energy contribution | -20.46 |
Covariance contribution | 3.80 |
Combinations/Pair | 1.14 |
Mean z-score | -1.58 |
Structure conservation index | 0.55 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10256099 105 + 27905053 CCCGAAUGGGGAUAAUUCUCUGGGCUUACUCCGAUACCCUUUCCAGGGAGUUGUCACCAUUUAUGGGAUGGAAAUUA------GUCA------CUUUCCAAGGGAAAAUUAUUUGAA- (((((((((.((((((((((((((.................)))))))))))))).))))))......((((((...------....------.)))))).))).............- ( -34.53) >DroSec_CAF1 113783 105 + 1 CCCGAAUGGGGAUAAUUCUCUGGGCUUACAUCGAUACCCUUUCCAGGGAGCAGCCACCAUUUAUGGGAUGGAAAUUG------GUCA------UUUUCCAAGGGAAAAUUCUUGGAA- (((((((((((....(((((((((.................)))))))))...)).))))))..)))..........------....------..(((((((((....)))))))))- ( -29.93) >DroSim_CAF1 112361 105 + 1 CCCGAAUGGGGAUCAUUCUCUGGGCUUACAUCGAUACCCUUUCCAGGGAGUUGUCACCACUUAUUGGAUGGAAAUUG------GUCA------UUUUCCAAGGGAAAAUUCUUUGAA- (((...(((.(((.((((((((((.................)))))))))).))).))).........((((((...------....------.)))))).))).............- ( -28.23) >DroEre_CAF1 114268 104 + 1 CCCGAGUGCGGAUGA-UCUCUGGGCUCAGUGCGAUACCCUUUCCAGGGAGCCUUCCCCUCCAAGUGAAUGAGAAUGGCACUCUACUAUCAUCUAUCUACAAGUAG------------- ...((((.((((...-..)))).))))(((((.((.(.(.((((..((((.......))))..).))).).).)).)))))(((((..............)))))------------- ( -26.44) >DroYak_CAF1 120663 107 + 1 CCCGAGUAGGGAUAAUUCUCUGGGCUCAGUUCG-UACCCUUUCCAGUGAGUUUUCCCCUUUAA-----UGGAAAAGAAGAUCCACUAU-----AUUUACAGGGGAAAAUGGGGUAUAU ...(((((((((....)))))..)))).....(-((((((.........((((((((((.(((-----((((........))))....-----..))).))))))))))))))))).. ( -33.20) >consensus CCCGAAUGGGGAUAAUUCUCUGGGCUUACUUCGAUACCCUUUCCAGGGAGUUGUCACCAUUUAUGGGAUGGAAAUUG______GUCA______AUUUCCAAGGGAAAAUUCUUUGAA_ (((((((((.((((((((((((((.................)))))))))))))).))))))......((((((....................)))))).))).............. (-16.66 = -20.46 + 3.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:02 2006