Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,252,958 – 10,253,109 |
Length | 151 |
Max. P | 0.574943 |
Location | 10,252,958 – 10,253,069 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 82.32 |
Mean single sequence MFE | -31.73 |
Consensus MFE | -25.95 |
Energy contribution | -26.95 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.04 |
Mean z-score | -1.42 |
Structure conservation index | 0.82 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10252958 111 - 27905053 GCCAAUACGGAAGCAAUGUUGCCGCUGCACUUGCAACAGGAGCAACAUUGGCAACAUCGGCAACAUCGGCCACAUC------AUCGGCAACGGGAGCAACAUCGCCAGGCAGCCACA (((....(....)..(((((((((.(((.((((...)))).)))....((....)).))))))))).(((......------.(((....)))((......))))).)))....... ( -34.20) >DroSim_CAF1 109225 99 - 1 GCCAAUACGGAAGCAAUGUUGCCGCUGCACUUGCAACAGGAGCAACAUUGGCAACAGGAGCAACAU------------------CGGCAACGGGAGCAACAUCGCCAGGCAGCCACA (((....(....)..(((((((((((((.((((...)))).))....(((....))).)))....(------------------((....)))).))))))).....)))....... ( -28.20) >DroEre_CAF1 111321 90 - 1 GCCAAUACGGAAGCAAUGUUGCCGCUGCACUUGCAACAGGAGCAACAUCGGCCACA---------------------------UCGGCAACGGGUGCAACAUCGCCAGGCAGCCACA (((....((...((.((((.((((.(((.((((...)))).)))....)))).)))---------------------------)..))..))((((......)))).)))....... ( -27.30) >DroYak_CAF1 117267 117 - 1 GCCAAUACGGAAGCAAUGUUGCCGCUGCACUUGCAACAGGAGCAACAUCGGCAACAUCAGCAACAUUGGCAACAUCGACCACAGCGGCAACGGGUGCAACAACGCCAGGCAGCCACA (((....(....)...(((((((((((...((((.....((......))(....)....))))...((....)).......)))))))))))((((......)))).)))....... ( -37.20) >consensus GCCAAUACGGAAGCAAUGUUGCCGCUGCACUUGCAACAGGAGCAACAUCGGCAACAUCAGCAACAU_________________UCGGCAACGGGAGCAACAUCGCCAGGCAGCCACA (((.........((..((((((((.(((.((((...)))).)))....))))))))...)).......................((....))((((......)))).)))....... (-25.95 = -26.95 + 1.00)
Location | 10,252,993 – 10,253,109 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.40 |
Mean single sequence MFE | -39.17 |
Consensus MFE | -27.46 |
Energy contribution | -28.35 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.06 |
Mean z-score | -1.55 |
Structure conservation index | 0.70 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10252993 116 + 27905053 ----GAUGUGGCCGAUGUUGCCGAUGUUGCCAAUGUUGCUCCUGUUGCAAGUGCAGCGGCAACAUUGCUUCCGUAUUGGCGGGUUCGCGGCAUGGUUGCACAACCGGUGCUAAAAACGCU ----..((..(((.(((((((((((((((((...(((((..((......)).)))))))))))))))..(((((....)))))...))))))))))..)).....((((.......)))) ( -44.20) >DroSec_CAF1 110748 106 + 1 --------------AUGUUGCUCCUGUUGCCAAUGUUGCUCCUGUUGCAAGUGCAGCGGCAACAUUGCUUCCGUAUUGGCGGGUUCGCGGCAUGGUUGCACAACCGGUGCUAAAAACGCU --------------.....((.((((((((((((((((((...(((((....)))))))))))))))..(((((....)))))...)))))).((((....)))))).)).......... ( -39.10) >DroSim_CAF1 109258 106 + 1 --------------AUGUUGCUCCUGUUGCCAAUGUUGCUCCUGUUGCAAGUGCAGCGGCAACAUUGCUUCCGUAUUGGCGGGUUCGCGGCAUGGUUGCACAACCGGUGCUAAAAACGCU --------------.....((.((((((((((((((((((...(((((....)))))))))))))))..(((((....)))))...)))))).((((....)))))).)).......... ( -39.10) >DroEre_CAF1 111355 96 + 1 ------------------------UGUGGCCGAUGUUGCUCCUGUUGCAAGUGCAGCGGCAACAUUGCUUCCGUAUUGGCGAGUUCGCGGCAUGGUUGCACAACCGGUGCUAAAAACGCU ------------------------.(((((((((((((((...(((((....))))))))))))))............(((....))))))......((((.....))))......))). ( -33.60) >DroWil_CAF1 123812 96 + 1 ---------------UGUUGCAGCCAUUGCCGAGGCAGCUACU---ACUAGUGCA------GCAUUGCUUCCGUAUUGGCGUGUGCGAGGCAUGGUUGCACAACCGGUGCUAAAAACGCU ---------------(((.((((((((.((((((((((((.(.---......).)------))..))))))(((((......))))).))))))))))))))...((((.......)))) ( -34.30) >DroYak_CAF1 117304 120 + 1 GGUCGAUGUUGCCAAUGUUGCUGAUGUUGCCGAUGUUGCUCCUGUUGCAAGUGCAGCGGCAACAUUGCUUCCGUAUUGGCGAGUUCGCGGCAUGGUUGCACAACCGGUGCUAAAAACGCU .(.(((..(((((((((..((.((((((((((.((((((.......)))...))).)))))))))))).....)))))))))..))))(((((((((....)))).)))))......... ( -44.70) >consensus ______________AUGUUGCUGCUGUUGCCAAUGUUGCUCCUGUUGCAAGUGCAGCGGCAACAUUGCUUCCGUAUUGGCGGGUUCGCGGCAUGGUUGCACAACCGGUGCUAAAAACGCU ............................((.(((((((((...(((((....))))))))))))))))...(((....(((....)))(((((((((....)))).)))))....))).. (-27.46 = -28.35 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:01 2006