| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,250,871 – 10,250,969 |
| Length | 98 |
| Max. P | 0.960826 |
| Location | 10,250,871 – 10,250,969 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 76.89 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -11.65 |
| Energy contribution | -11.98 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.960826 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10250871 98 + 27905053 GUAACGGCAAUUUCCAGCC--AAAACGGUGCACUAUUUGUCAUAAUAAAUGUGCACAAAGGAGACGUUGCCCCCAACUCGUCCCUCACCACCCGUUUCUC .....(((........)))--.(((((((((((.((((((....))))))))))))..(((.(((((((....))))..)))))).......)))))... ( -26.70) >DroPse_CAF1 117665 89 + 1 GUAACGGCAAUUUCCAGCCCAAAAGCGCUGCACUAUUUGUCAUAAUAAAUGUGCACAAAGGAGGUGUACACGU--------AC---ACCUCCUCCUUCUU .....(((........))).......(.(((((.((((((....))))))))))))..((((((((((....)--------))---)))))))....... ( -28.90) >DroSec_CAF1 108685 95 + 1 GUAACGGCAAUUUCCAGCC--AAAACGUUGCACUAUUUGUCAUAAUAAAUGUGCACAAAGGAGACAUUGCCCCCAACUCGCUCCUCA---CCCAAUGCUU (((..(((........)))--.....((.((((.((((((....))))))))))))..(((((...(((....)))....)))))..---.....))).. ( -18.90) >DroEre_CAF1 109303 84 + 1 GUAACGGCAAUUUCCAGUC--AAAACGUUGCACUAUUUGUCAUAAUAAAUGCGCACAAAGGAGACGUCGCCCC--------------CCACCCACUGCUU ....((((..(((((.((.--...))((.((.(.((((((....))))))).))))...))))).))))....--------------............. ( -12.30) >DroAna_CAF1 98055 95 + 1 GUAACGGCAAUUUCCAGCC--A-AACGCUGCACUAUUUGUCAUAAUAAAUGUGUACAAAGGAGACGU-GCCACAGUCCCUCCCCUC-CUACCCGCCACUU .....((((.((((((((.--.-...)))((((.((((((....)))))))))).....)))))..)-)))...............-............. ( -19.30) >DroPer_CAF1 120328 89 + 1 GUAACGGCAAUUUCCAGCCCAAAAGCGCUGCACUAUUUGUCAUAAUAAAUGUGCACAAAGGAGGUGUACACGU--------AC---ACCUCCUCCUUCUU .....(((........))).......(.(((((.((((((....))))))))))))..((((((((((....)--------))---)))))))....... ( -28.90) >consensus GUAACGGCAAUUUCCAGCC__AAAACGCUGCACUAUUUGUCAUAAUAAAUGUGCACAAAGGAGACGUAGCCCC________AC___ACCACCCACUUCUU .....(((..((((((((........)))((((.((((((....)))))))))).....)))))....)))............................. (-11.65 = -11.98 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:57 2006