Locus 3780

Sequence ID	3R_DroMel_CAF1
Location	10,250,370 – 10,250,460
Length	90
Max. P	0.936336

overview

Window 2

Location	10,250,370 – 10,250,460
Length	90
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	78.08
Mean single sequence MFE	-25.44
Consensus MFE	-18.04
Energy contribution	-18.08
Covariance contribution	0.04
Combinations/Pair	1.06
Mean z-score	-1.95
Structure conservation index	0.71
SVM decision value	1.25
SVM RNA-class probability	0.936336
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10250370 90 + 27905053
UAGUCGAUGCUGACGAGCGCCAAUUAAUGGCUGCUUAAACGGGAAAACUCAGCCACAUCC--AGUCAGUCAGUCGGUUUUCCAUUCAUCCAG
.(..((((((((((((((((((.....)))).))))....(((....)))..........--.))))))..))))..).............. ( -23.40)
>DroSec_CAF1 108185 90 + 1
UAGUCGAUGCUGACGAGCGCCAAUUAAUGGCUGCUUAAACGGGAAAACUCAGCCCCAUCC--AGUCAGUCGGUCGGUUUUCCAUUCAUCCAG
.(..((((((((((((((((((.....)))).))))....(((..........)))....--.))))))..))))..).............. ( -25.90)
>DroSim_CAF1 106645 90 + 1
UAGUCGAUGCUGACGAGCGCCAAUUAAUGGCUGCUUAAACGGGAAAACUCAGCCCCAUCC--AGUCAGUCGGUCGGUUUUCCAUUCAUCCAG
.(..((((((((((((((((((.....)))).))))....(((..........)))....--.))))))..))))..).............. ( -25.90)
>DroEre_CAF1 108850 74 + 1
UAGUCGAUGCUGACGAGCGCCAAUUAAUGGCUGCUUAAACGGGAAAACUCCUCCCCAUCCCCAGUCAGCC------------------CCAG
.....(..((((((((((((((.....)))).))))....((((.......))))........)))))).------------------.).. ( -24.50)
>DroAna_CAF1 97644 77 + 1
-------UGCUGACGAGCGCCAAUUAAUGGCUGCUUAAACGGGAAACCUCCA------CU--AGGCAGUCAGCAACUCAGCCACUCAGCUAG
-------(((((((....((((.....))))((((((...((....))....------.)--))))))))))))....(((......))).. ( -27.50)
>consensus
UAGUCGAUGCUGACGAGCGCCAAUUAAUGGCUGCUUAAACGGGAAAACUCAGCCCCAUCC__AGUCAGUCAGUCGGUUUUCCAUUCAUCCAG
........((((((((((((((.....)))).))))....(((....))).............))))))....................... (-18.04 = -18.08 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:56 2006