Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,236,116 – 10,236,221 |
Length | 105 |
Max. P | 0.745845 |
Location | 10,236,116 – 10,236,221 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 78.75 |
Mean single sequence MFE | -32.15 |
Consensus MFE | -19.04 |
Energy contribution | -19.09 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.27 |
Mean z-score | -1.79 |
Structure conservation index | 0.59 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10236116 105 - 27905053 UGCCUCUUCCAGGCCACCAUUCCAUUGCAAUCGUUUUACCUUGAUUGCGGACGCAACGAGGCAUCGCCGGCAACCAAAUCGAAUG---UUGCCUAUAUGCGCACCCUG .((((.....))))............(((((((........)))))))((.((((....(((...)))((((((..........)---)))))....))))..))... ( -29.40) >DroVir_CAF1 111155 93 - 1 ------UUGCAGGCAACCAUUCCACUGCAAUCGUUUAACCUUGAUUGCGGACGCAGCGAGGUGG------UCGCCAAGCCGAACG---UUGCCUACAUGCGGACGCUG ------.((.(((((((..(((..(((((((((........))))))))).....((..(((..------..)))..)).))).)---)))))).)).((....)).. ( -30.50) >DroGri_CAF1 98919 105 - 1 UGCGUGUUGCAGGCAACCAUUCCAUUGCAAUCGUUUAACCUUGAUUGCGGACGCAACGAGGCAG---CAGCAGCCAAGCCAAAAGUUGUUGCCUAUAUGCGAACGCUG .((((((((....))))...(((...(((((((........))))))))))((((...((((((---((((.............))))))))))...)))).)))).. ( -38.12) >DroWil_CAF1 107774 102 - 1 ---UGCUUGCAGGCAACCAUUCCAUUGCAAUCGUUUAACCUUGAUUGCGGACGCAACGAGACGACGGCGACAACCAAAUCGAAUG---UUGCCUACAUGCGCACCCUA ---.((.((.(((((((.((((..(((((((((........))))))))).(((..((...))...)))...........)))))---)))))).)).))........ ( -30.40) >DroMoj_CAF1 103769 95 - 1 ----UGUUGCAGGCAACCAUUCCACUGCAAUCGUUCAACCUUGAUUGCGGACGCAGCGAGGUGG------CUGCCAAGCCGAGCA---UUGCCUAUAUGCGCACAUUG ----(((.((.(((..........(((((((((........)))))))))..(((((......)------))))...)))..(((---(.......)))))))))... ( -33.00) >DroAna_CAF1 85528 96 - 1 UGUUCCUUUCAGGCCACCAUUCCACUGCAGUCGUUUAACCUUGAUUGCGGACGCAGCGAGG---------CAGCCAAAUCGAAUG---UUGCCUACAUGCGCACCCUG .........((((...........(((((((((........))))))))).((((...(((---------((((..........)---))))))...))))...)))) ( -31.50) >consensus ____UCUUGCAGGCAACCAUUCCACUGCAAUCGUUUAACCUUGAUUGCGGACGCAACGAGGCGG______CAGCCAAACCGAAUG___UUGCCUACAUGCGCACCCUG .........(((............(((((((((........))))))))).((((...((((((........................))))))...))))....))) (-19.04 = -19.09 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:40 2006