| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,444,723 – 1,444,814 |
| Length | 91 |
| Max. P | 0.610379 |
| Location | 1,444,723 – 1,444,814 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 83.72 |
| Mean single sequence MFE | -19.07 |
| Consensus MFE | -14.13 |
| Energy contribution | -15.13 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.610379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1444723 91 + 27905053 AUUAUAGUAAUAAAUAUUGCACUACUCCCAAAACCAAUUGGGAAUAGGAAUAUGUGUAUUCAGUUCCAGCCCAGAAGCGCAGCUAUGGACC .(((((((.....(((((.(.(((.((((((......)))))).)))))))))((((.(((............))))))).)))))))... ( -19.60) >DroSec_CAF1 17473 76 + 1 ---------------AUUGCACUUCUCGCCAAAACAAUUGGGAAUAUGAAUAUGUAUAUUCAGUUCCAGCCCAGAAGCGCAGCUAUGGACC ---------------.((((.(((((.(((((.....)))(((((.((((((....))))))))))).))..))))).))))......... ( -19.10) >DroSim_CAF1 15711 76 + 1 ---------------AUUGCACUUCUCGCAAAACCAAUUGGGAAUAUGAAUAUGUAUAUUCAGUUCCAGCCCAGAAGCGCAGCUAUGGACC ---------------.((((.(((((.((.....(....)(((((.((((((....))))))))))).))..))))).))))......... ( -18.50) >consensus _______________AUUGCACUUCUCGCAAAACCAAUUGGGAAUAUGAAUAUGUAUAUUCAGUUCCAGCCCAGAAGCGCAGCUAUGGACC ................((((.(((((..(((......)))(((((.((((((....))))))))))).....))))).))))......... (-14.13 = -15.13 + 1.00)
| Location | 1,444,723 – 1,444,814 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 83.72 |
| Mean single sequence MFE | -22.53 |
| Consensus MFE | -14.97 |
| Energy contribution | -15.97 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1444723 91 - 27905053 GGUCCAUAGCUGCGCUUCUGGGCUGGAACUGAAUACACAUAUUCCUAUUCCCAAUUGGUUUUGGGAGUAGUGCAAUAUUUAUUACUAUAAU ((((((.(((...)))..))))))..............((((((((((((((((......)))))))))).).)))))............. ( -23.80) >DroSec_CAF1 17473 76 - 1 GGUCCAUAGCUGCGCUUCUGGGCUGGAACUGAAUAUACAUAUUCAUAUUCCCAAUUGUUUUGGCGAGAAGUGCAAU--------------- ..........(((((((((.(.(..((((.((((((........))))))......))))..)).)))))))))..--------------- ( -23.30) >DroSim_CAF1 15711 76 - 1 GGUCCAUAGCUGCGCUUCUGGGCUGGAACUGAAUAUACAUAUUCAUAUUCCCAAUUGGUUUUGCGAGAAGUGCAAU--------------- ..........(((((((((.(...((((.((((((....))))))..))))(((......)))).)))))))))..--------------- ( -20.50) >consensus GGUCCAUAGCUGCGCUUCUGGGCUGGAACUGAAUAUACAUAUUCAUAUUCCCAAUUGGUUUUGCGAGAAGUGCAAU_______________ ..........(((((((((.(...((((..(((((....)))))...))))(((......)))).)))))))))................. (-14.97 = -15.97 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:46 2006