Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,228,507 – 10,228,597 |
Length | 90 |
Max. P | 0.748460 |
Location | 10,228,507 – 10,228,597 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 94.73 |
Mean single sequence MFE | -21.42 |
Consensus MFE | -19.58 |
Energy contribution | -19.72 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.12 |
Mean z-score | -1.18 |
Structure conservation index | 0.91 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10228507 90 - 27905053 -UAUGGCGGCAUAAUUGGCAUAUGAAAUCGUUUAGCGGCAA-AUUAAUGA-AAUUGCUGAAUAAUGUUUCGGCCAGCCUGUGGCAAUUGAAUU -....((.(((...(((((....((((.((((...((((((-.((....)-).))))))...)))))))).)))))..))).))......... ( -23.70) >DroSec_CAF1 86396 90 - 1 -UAUGGCAGCAUAAUUGGCAUAUGAAAUCGUUUAGCGGCAA-AUUAAUGA-AAUUGCUGAAUAAUGUUUCGGCCAGCCUGUGGCAAUUGAAUU -..((((.((.......))...(((((.((((...((((((-.((....)-).))))))...)))))))))))))(((...)))......... ( -21.70) >DroSim_CAF1 86213 90 - 1 -UAUGGCAGCAUAAUUGGCAUAUGAAAUCGUUUAGCGGCAA-AUUAAUGA-AAUUGCUGAAUAAUGUUUCGGCCAGCCUGUGGCAAUUGAAUU -..((((.((.......))...(((((.((((...((((((-.((....)-).))))))...)))))))))))))(((...)))......... ( -21.70) >DroEre_CAF1 87899 90 - 1 -UAUGGCAGCAUAAUUGGCAUAUGAAAUCGCUUAGCGGCAA-AUUAAUGA-AAUUGCUGAAUAAUGUUUCGGCCAGCCUGCGGCAAUUGAAUU -....((.(((...(((((....(((((.......((((((-.((....)-).))))))......))))).)))))..))).))......... ( -20.52) >DroYak_CAF1 92313 90 - 1 -UAUGGCAGCAUAAUUGGCAUAUGAAAUCGCUUAGCGGCAA-AUUAAUGA-AAUUGCUGAAUAAUGUUUCGGCCAGCCUGCGGCAAUUGAAUU -....((.(((...(((((....(((((.......((((((-.((....)-).))))))......))))).)))))..))).))......... ( -20.52) >DroAna_CAF1 79251 92 - 1 AUAUGGCAGCAUAAUUGGCAUAUGA-ACCGUUUAGCGGCAAAAUUAUUGAAAAUUGCUGAAUAAUGUUUCGGCUGGCCGGCAGCAAUUGAAUU (((((.(((.....))).)))))((-(.((((...((((((............))))))...)))).))).((((.....))))......... ( -20.40) >consensus _UAUGGCAGCAUAAUUGGCAUAUGAAAUCGUUUAGCGGCAA_AUUAAUGA_AAUUGCUGAAUAAUGUUUCGGCCAGCCUGCGGCAAUUGAAUU .....((.(((...(((((....((((.((((...((((((............))))))...)))))))).)))))..))).))......... (-19.58 = -19.72 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:32 2006